RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 ZBTB47Q9UFB7 747 aaPredicted RBP37.79■■■■□ 3.64
CCM2-219ENST00000544363 ZBTB38Q8NAP3 1195 aaPredicted RBP37.78■■■■□ 3.64
CCM2-219ENST00000544363 BCORQ6W2J9 1755 aa37.77■■■■□ 3.64
CCM2-219ENST00000544363 RTL5Q5HYW3 569 aaPredicted RBP37.77■■■■□ 3.64
CCM2-219ENST00000544363 ZNF652Q9Y2D9 606 aa37.77■■■■□ 3.64
CCM2-219ENST00000544363 PLSCR1O15162 318 aa37.76■■■■□ 3.64
CCM2-219ENST00000544363 RGL2O15211 777 aa37.76■■■■□ 3.64
CCM2-219ENST00000544363 CLEC4GQ6UXB4 293 aa37.76■■■■□ 3.63
CCM2-219ENST00000544363 AK7Q96M32 723 aa37.76■■■■□ 3.63
CCM2-219ENST00000544363 APBB1O00213 710 aa37.75■■■■□ 3.63
CCM2-219ENST00000544363 SURF6O75683 361 aaKnown RBP37.75■■■■□ 3.63
CCM2-219ENST00000544363 APBA3O96018 575 aa37.75■■■■□ 3.63
CCM2-219ENST00000544363 FOXO4P98177 505 aa37.75■■■■□ 3.63
CCM2-219ENST00000544363 UBN2Q6ZU65 1347 aa37.74■■■■□ 3.63
CCM2-219ENST00000544363 HMGB2P26583 209 aaKnown RBP37.74■■■■□ 3.63
CCM2-219ENST00000544363 TXNRD1Q16881 649 aa37.74■■■■□ 3.63
CCM2-219ENST00000544363 NOP58Q9Y2X3 529 aaKnown RBP37.74■■■■□ 3.63
CCM2-219ENST00000544363 RAB11FIP3O75154 756 aa37.73■■■■□ 3.63
CCM2-219ENST00000544363 SMIM5Q71RC9 77 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 PROM2Q8N271 834 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 FAM89AQ96GI7 184 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 NARFQ9UHQ1 456 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 HSP90AB4PQ58FF6 505 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 LRRCC1Q9C099 1032 aa37.72■■■■□ 3.63
CCM2-219ENST00000544363 CDHR2Q9BYE9 1310 aa37.71■■■■□ 3.63
CCM2-219ENST00000544363 SMARCA5O60264 1052 aaPredicted RBP37.71■■■■□ 3.63
CCM2-219ENST00000544363 PARP10Q53GL7 1025 aa37.71■■■■□ 3.63
CCM2-219ENST00000544363 LMBR1LQ6UX01 489 aa37.7■■■■□ 3.63
CCM2-219ENST00000544363 PLA2G12BQ9BX93 195 aa37.7■■■■□ 3.63
CCM2-219ENST00000544363 TRMT112Q9UI30 125 aaKnown RBP37.7■■■■□ 3.63
CCM2-219ENST00000544363 AMIGO3Q86WK7 504 aa37.69■■■■□ 3.62
CCM2-219ENST00000544363 SCN7AQ01118 1682 aa37.69■■■■□ 3.62
CCM2-219ENST00000544363 ARHGEF1Q92888 912 aaKnown RBP37.69■■■■□ 3.62
CCM2-219ENST00000544363 NIP7Q9Y221 180 aaKnown RBP eCLIP37.69■■■■□ 3.62
CCM2-219ENST00000544363 PA2G4Q9UQ80 394 aaKnown RBP37.68■■■■□ 3.62
CCM2-219ENST00000544363 TRAPPC3LQ5T215 181 aa37.67■■■■□ 3.62
CCM2-219ENST00000544363 TSHZ2Q9NRE2 1034 aa37.67■■■■□ 3.62
CCM2-219ENST00000544363 TNS1Q9HBL0 1735 aaKnown RBP37.67■■■■□ 3.62
CCM2-219ENST00000544363 ZPR1O75312 459 aa37.66■■■■□ 3.62
CCM2-219ENST00000544363 SUSD4Q5VX71 490 aa37.66■■■■□ 3.62
CCM2-219ENST00000544363 ADRA2BP18089 450 aa37.65■■■■□ 3.62
CCM2-219ENST00000544363 RFX5P48382 616 aaPredicted RBP37.65■■■■□ 3.62
CCM2-219ENST00000544363 USPL1Q5W0Q7 1092 aa37.65■■■■□ 3.62
CCM2-219ENST00000544363 BCL2L12Q9HB09 334 aa37.65■■■■□ 3.62
CCM2-219ENST00000544363 C16orf71Q8IYS4 520 aaPredicted RBP37.65■■■■□ 3.62
CCM2-219ENST00000544363 KIF1BPQ96EK5 621 aa37.65■■■■□ 3.62
CCM2-219ENST00000544363 UTP14AQ9BVJ6 771 aaKnown RBP37.65■■■■□ 3.62
CCM2-219ENST00000544363 SRP68Q9UHB9 627 aaKnown RBP37.65■■■■□ 3.62
CCM2-219ENST00000544363 SYNE4Q8N205 404 aa37.64■■■■□ 3.62
CCM2-219ENST00000544363 RHPN1Q8TCX5 695 aa37.64■■■■□ 3.62
CCM2-219ENST00000544363 UBR3Q6ZT12 1888 aa37.63■■■■□ 3.61
CCM2-219ENST00000544363 OS9Q13438 667 aaPredicted RBP37.63■■■■□ 3.61
CCM2-219ENST00000544363 COPRSQ9NQ92 184 aa37.63■■■■□ 3.61
CCM2-219ENST00000544363 IRS4O14654 1257 aaPredicted RBP37.62■■■■□ 3.61
CCM2-219ENST00000544363 PHF14O94880 888 aa37.62■■■■□ 3.61
CCM2-219ENST00000544363 RFC4P35249 363 aa37.62■■■■□ 3.61
CCM2-219ENST00000544363 CHMP3Q9Y3E7 222 aa37.62■■■■□ 3.61
CCM2-219ENST00000544363 ERC1Q8IUD2 1116 aa37.61■■■■□ 3.61
CCM2-219ENST00000544363 PLEKHM2Q8IWE5 1019 aa37.61■■■■□ 3.61
CCM2-219ENST00000544363 BCL11AQ9H165 835 aa37.61■■■■□ 3.61
CCM2-219ENST00000544363 C4AP0C0L4 1744 aa37.61■■■■□ 3.61
CCM2-219ENST00000544363 USP42Q9H9J4 1324 aaKnown RBP37.61■■■■□ 3.61
CCM2-219ENST00000544363 PTPN12Q05209 780 aaKnown RBP37.61■■■■□ 3.61
CCM2-219ENST00000544363 G3BP1Q13283 466 aaKnown RBP eCLIP37.61■■■■□ 3.61
CCM2-219ENST00000544363 SH3TC1Q8TE82 1336 aa37.6■■■■□ 3.61
CCM2-219ENST00000544363 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP37.59■■■■□ 3.61
CCM2-219ENST00000544363 CSF1RP07333 972 aa37.59■■■■□ 3.61
CCM2-219ENST00000544363 SSFA2P28290 1259 aa37.59■■■■□ 3.61
CCM2-219ENST00000544363 KLHDC4Q8TBB5 520 aa37.59■■■■□ 3.61
CCM2-219ENST00000544363 NTSR2O95665 410 aa37.58■■■■□ 3.61
CCM2-219ENST00000544363 RGPD3A6NKT7 1758 aaPredicted RBP37.58■■■■□ 3.61
CCM2-219ENST00000544363 RGPD4Q7Z3J3 1758 aa37.58■■■■□ 3.61
CCM2-219ENST00000544363 PDE8AO60658 829 aa37.58■■■■□ 3.61
CCM2-219ENST00000544363 FAM161AQ3B820 660 aa37.58■■■■□ 3.61
CCM2-219ENST00000544363 TBC1D9BQ66K14 1250 aa37.58■■■■□ 3.61
CCM2-219ENST00000544363 OTUD7AQ8TE49 926 aaPredicted RBP37.58■■■■□ 3.61
CCM2-219ENST00000544363 FAM177BA6PVY3 158 aa37.57■■■■□ 3.6
CCM2-219ENST00000544363 IL1RAPL2Q9NP60 686 aa37.57■■■■□ 3.6
CCM2-219ENST00000544363 SIL1Q9H173 461 aa37.56■■■■□ 3.6
CCM2-219ENST00000544363 BACH2Q9BYV9 841 aa37.55■■■■□ 3.6
CCM2-219ENST00000544363 CTSWP56202 376 aa37.54■■■■□ 3.6
CCM2-219ENST00000544363 TTLL11Q8NHH1 800 aa37.54■■■■□ 3.6
CCM2-219ENST00000544363 SASH1O94885 1247 aa37.53■■■■□ 3.6
CCM2-219ENST00000544363 BICDL1Q6ZP65 573 aa37.53■■■■□ 3.6
CCM2-219ENST00000544363 MYH3P11055 1940 aa37.53■■■■□ 3.6
CCM2-219ENST00000544363 SALL3Q9BXA9 1300 aa37.52■■■■□ 3.6
CCM2-219ENST00000544363 HSP90B1P14625 803 aaKnown RBP37.52■■■■□ 3.6
CCM2-219ENST00000544363 CCDC57Q2TAC2 916 aa37.52■■■■□ 3.6
CCM2-219ENST00000544363 C8orf34Q49A92 452 aa37.52■■■■□ 3.6
CCM2-219ENST00000544363 SETDB2Q96T68 719 aa37.52■■■■□ 3.6
CCM2-219ENST00000544363 BMP2KLQ5H9B9 411 aa37.5■■■■□ 3.59
CCM2-219ENST00000544363 AKT1S1Q96B36 256 aa37.5■■■■□ 3.59
CCM2-219ENST00000544363 OSBPL3Q9H4L5 887 aa37.5■■■■□ 3.59
CCM2-219ENST00000544363 HCLS1P14317 486 aaPredicted RBP37.49■■■■□ 3.59
CCM2-219ENST00000544363 NUTM1Q86Y26 1132 aa37.49■■■■□ 3.59
CCM2-219ENST00000544363 CLASRPQ8N2M8 674 aaKnown RBP37.49■■■■□ 3.59
CCM2-219ENST00000544363 PDE1AP54750 535 aa37.48■■■■□ 3.59
CCM2-219ENST00000544363 ZNF827Q17R98 1081 aa37.48■■■■□ 3.59
CCM2-219ENST00000544363 COL24A1Q17RW2 1714 aa37.48■■■■□ 3.59
CCM2-219ENST00000544363 IFIT5Q13325 482 aaKnown RBP37.47■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 704.5 ms