RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 VPS53Q5VIR6 699 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 LMOD2Q6P5Q4 547 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 CADPS2Q86UW7 1296 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 ZSCAN31Q96LW9 406 aaPredicted RBP11.94□□□□□ -0.5
LMO3-227ENST00000541764 ALDH8A1Q9H2A2 487 aaPredicted RBP11.94□□□□□ -0.5
LMO3-227ENST00000541764 BICC1Q9H694 974 aaKnown RBP11.94□□□□□ -0.5
LMO3-227ENST00000541764 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 COPRSQ9NQ92 184 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 DIAPH3Q9NSV4 1193 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 JCADQ9P266 1359 aa11.93□□□□□ -0.5
LMO3-227ENST00000541764 NECTIN1Q15223 517 aa11.93□□□□□ -0.5
LMO3-227ENST00000541764 RABL6Q3YEC7 729 aaPredicted RBP11.93□□□□□ -0.5
LMO3-227ENST00000541764 CAVIN1Q6NZI2 390 aaKnown RBP11.93□□□□□ -0.5
LMO3-227ENST00000541764 RIC3Q7Z5B4 369 aa11.93□□□□□ -0.5
LMO3-227ENST00000541764 RASEFQ8IZ41 740 aa11.93□□□□□ -0.5
LMO3-227ENST00000541764 UPF3BQ9BZI7 483 aaKnown RBP11.93□□□□□ -0.5
LMO3-227ENST00000541764 SH2B1Q9NRF2 756 aaPredicted RBP11.93□□□□□ -0.5
LMO3-227ENST00000541764 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.93□□□□□ -0.5
LMO3-227ENST00000541764 SPATA31A3Q5VYP0 1347 aa11.93□□□□□ -0.5
LMO3-227ENST00000541764 GLI3P10071 1580 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 ZC3H6P61129 1189 aaKnown RBP11.92□□□□□ -0.5
LMO3-227ENST00000541764 TSGA10IPQ3SY00 556 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 LRSAM1Q6UWE0 723 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 CWC27Q6UX04 472 aaKnown RBP11.92□□□□□ -0.5
LMO3-227ENST00000541764 AACSQ86V21 672 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 MAP4K1Q92918 833 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 EAF2Q96CJ1 260 aaPredicted RBP11.92□□□□□ -0.5
LMO3-227ENST00000541764 FMNL2Q96PY5 1086 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 NLRP2Q9NX02 1062 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 PA2G4Q9UQ80 394 aaKnown RBP11.92□□□□□ -0.5
LMO3-227ENST00000541764 SSUH2Q9Y2M2 353 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 CCDC171Q6TFL3 1326 aa11.92□□□□□ -0.5
LMO3-227ENST00000541764 ESPNB1AK53 854 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 CYP27B1O15528 508 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 MAP4K4O95819 1239 aaPredicted RBP11.91□□□□□ -0.5
LMO3-227ENST00000541764 AK2P54819 239 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 ANKRD13DQ6ZTN6 518 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 RUFY3Q7L099 469 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 NFATC2IPQ8NCF5 419 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 XAGE3Q8WTP9 111 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 ANP32BQ92688 251 aaKnown RBP11.91□□□□□ -0.5
LMO3-227ENST00000541764 SYAP1Q96A49 352 aaPredicted RBP11.91□□□□□ -0.5
LMO3-227ENST00000541764 ZNF496Q96IT1 587 aaPredicted RBP11.91□□□□□ -0.5
LMO3-227ENST00000541764 PDLIM2Q96JY6 352 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 RPAP1Q9BWH6 1393 aaPredicted RBP11.91□□□□□ -0.5
LMO3-227ENST00000541764 LAMB4A4D0S4 1761 aa11.91□□□□□ -0.5
LMO3-227ENST00000541764 STRCP1A6NGW2 1772 aa11.9□□□□□ -0.5
LMO3-227ENST00000541764 RFX5P48382 616 aaPredicted RBP11.9□□□□□ -0.5
LMO3-227ENST00000541764 COPS6Q7L5N1 327 aa11.9□□□□□ -0.5
LMO3-227ENST00000541764 TMEM63CQ9P1W3 806 aa11.9□□□□□ -0.5
LMO3-227ENST00000541764 MED23Q9ULK4 1368 aa11.9□□□□□ -0.5
LMO3-227ENST00000541764 ATP5JP18859 108 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 CASP7P55210 303 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 PTH1RQ03431 593 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 SLC39A6Q13433 755 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 TTC5Q8N0Z6 440 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 TRIM44Q96DX7 344 aaPredicted RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 ATP6V1DQ9Y5K8 247 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 CYP46A1Q9Y6A2 500 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 PHF14O94880 888 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 ZSCAN22P10073 491 aaPredicted RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 CD44P16070 742 aaKnown RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 ZKSCAN1P17029 563 aaPredicted RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 PSMA5P28066 241 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 AIMP1Q12904 312 aaKnown RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 NKX1-1Q15270 411 aaPredicted RBP11.89□□□□□ -0.51
LMO3-227ENST00000541764 PLBD2Q8NHP8 589 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 ARXQ96QS3 562 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 HMG20BQ9P0W2 317 aa11.89□□□□□ -0.51
LMO3-227ENST00000541764 ERVV-2B6SEH9 535 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 STX6O43752 255 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 NCLP19338 710 aaKnown RBP11.88□□□□□ -0.51
LMO3-227ENST00000541764 CASTP20810 708 aaKnown RBP11.88□□□□□ -0.51
LMO3-227ENST00000541764 PRIM1P49642 420 aaKnown RBP11.88□□□□□ -0.51
LMO3-227ENST00000541764 PTPN12Q05209 780 aaKnown RBP11.88□□□□□ -0.51
LMO3-227ENST00000541764 EPHA10Q5JZY3 1008 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 RNF20Q5VTR2 975 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 USPL1Q5W0Q7 1092 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 CREB3L3Q68CJ9 461 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 MYD88Q99836 296 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 RBSNQ9H1K0 784 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 GPR108Q9NPR9 543 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 PDRG1Q9NUG6 133 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 RBM8AQ9Y5S9 174 aaKnown RBP11.88□□□□□ -0.51
LMO3-227ENST00000541764 USP16Q9Y5T5 823 aa11.88□□□□□ -0.51
LMO3-227ENST00000541764 LETM1O95202 739 aaPredicted RBP11.87□□□□□ -0.51
LMO3-227ENST00000541764 SYT1P21579 422 aa11.87□□□□□ -0.51
LMO3-227ENST00000541764 NMIQ13287 307 aaPredicted RBP11.87□□□□□ -0.51
LMO3-227ENST00000541764 ANKRD1Q15327 319 aa11.87□□□□□ -0.51
LMO3-227ENST00000541764 CSPP1Q1MSJ5 1256 aa11.87□□□□□ -0.51
LMO3-227ENST00000541764 PRPF40BQ6NWY9 871 aaKnown RBP11.87□□□□□ -0.51
LMO3-227ENST00000541764 SMC3Q9UQE7 1217 aa11.87□□□□□ -0.51
LMO3-227ENST00000541764 H7C1W4 665 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 SLC27A2O14975 620 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 F13A1P00488 732 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 CSB-PGBD3P0DP91 1061 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 CABP4P57796 275 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 JAKMIP1Q96N16 626 aaKnown RBP11.86□□□□□ -0.51
LMO3-227ENST00000541764 DCBLD2Q96PD2 775 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 RBM27Q9P2N5 1060 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms