RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ADRA2BP18089 450 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 RGS3P49796 1198 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 PARP10Q53GL7 1025 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 SKAP1Q86WV1 359 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 PROM2Q8N271 834 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 AK7Q96M32 723 aa22.02■■□□□ 1.12
CLIP1-215ENST00000541108 ZBTB47Q9UFB7 747 aaPredicted RBP22.02■■□□□ 1.12
CLIP1-215ENST00000541108 HSP90AB4PQ58FF6 505 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 NOP58Q9Y2X3 529 aaKnown RBP22.01■■□□□ 1.11
CLIP1-215ENST00000541108 BCORQ6W2J9 1755 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 CDHR2Q9BYE9 1310 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 RAB11FIP3O75154 756 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 GPTP24298 496 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 EPHA10Q5JZY3 1008 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 PLA2G12BQ9BX93 195 aa22.01■■□□□ 1.11
CLIP1-215ENST00000541108 TRAPPC3LQ5T215 181 aa22■■□□□ 1.11
CLIP1-215ENST00000541108 LNPKQ9C0E8 428 aa22■■□□□ 1.11
CLIP1-215ENST00000541108 SURF6O75683 361 aaKnown RBP21.99■■□□□ 1.11
CLIP1-215ENST00000541108 FOXO4P98177 505 aa21.99■■□□□ 1.11
CLIP1-215ENST00000541108 JARID2Q92833 1246 aaPredicted RBP21.99■■□□□ 1.11
CLIP1-215ENST00000541108 EXOC6BQ9Y2D4 811 aa21.99■■□□□ 1.11
CLIP1-215ENST00000541108 UBN2Q6ZU65 1347 aa21.99■■□□□ 1.11
CLIP1-215ENST00000541108 ZPR1O75312 459 aa21.98■■□□□ 1.11
CLIP1-215ENST00000541108 ARHGEF1Q92888 912 aaKnown RBP21.98■■□□□ 1.11
CLIP1-215ENST00000541108 RGPD3A6NKT7 1758 aaPredicted RBP21.98■■□□□ 1.11
CLIP1-215ENST00000541108 RGPD4Q7Z3J3 1758 aa21.98■■□□□ 1.11
CLIP1-215ENST00000541108 PDE4AP27815 886 aa21.98■■□□□ 1.11
CLIP1-215ENST00000541108 FAM89AQ96GI7 184 aa21.98■■□□□ 1.11
CLIP1-215ENST00000541108 LRRCC1Q9C099 1032 aa21.98■■□□□ 1.11
CLIP1-215ENST00000541108 TRMT112Q9UI30 125 aaKnown RBP21.98■■□□□ 1.11
CLIP1-215ENST00000541108 SCN7AQ01118 1682 aa21.97■■□□□ 1.11
CLIP1-215ENST00000541108 TNS1Q9HBL0 1735 aaKnown RBP21.97■■□□□ 1.11
CLIP1-215ENST00000541108 NIP7Q9Y221 180 aaKnown RBP eCLIP21.97■■□□□ 1.11
CLIP1-215ENST00000541108 SSFA2P28290 1259 aa21.96■■□□□ 1.11
CLIP1-215ENST00000541108 RFC4P35249 363 aa21.96■■□□□ 1.11
CLIP1-215ENST00000541108 RTL5Q5HYW3 569 aaPredicted RBP21.96■■□□□ 1.11
CLIP1-215ENST00000541108 LMBR1LQ6UX01 489 aa21.96■■□□□ 1.11
CLIP1-215ENST00000541108 UTP14AQ9BVJ6 771 aaKnown RBP21.95■■□□□ 1.1
CLIP1-215ENST00000541108 COPRSQ9NQ92 184 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 UBR3Q6ZT12 1888 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 HSP90B1P14625 803 aaKnown RBP21.95■■□□□ 1.1
CLIP1-215ENST00000541108 SUSD4Q5VX71 490 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 USPL1Q5W0Q7 1092 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 AMIGO3Q86WK7 504 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 ERC1Q8IUD2 1116 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 KIF1BPQ96EK5 621 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 BCL2L12Q9HB09 334 aa21.95■■□□□ 1.1
CLIP1-215ENST00000541108 USP42Q9H9J4 1324 aaKnown RBP21.94■■□□□ 1.1
CLIP1-215ENST00000541108 CSF1RP07333 972 aa21.94■■□□□ 1.1
CLIP1-215ENST00000541108 RFX5P48382 616 aaPredicted RBP21.94■■□□□ 1.1
CLIP1-215ENST00000541108 ILDR1Q86SU0 546 aaPredicted RBP21.94■■□□□ 1.1
CLIP1-215ENST00000541108 SH3TC1Q8TE82 1336 aa21.94■■□□□ 1.1
CLIP1-215ENST00000541108 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.93■■□□□ 1.1
CLIP1-215ENST00000541108 IRS4O14654 1257 aaPredicted RBP21.93■■□□□ 1.1
CLIP1-215ENST00000541108 APBB1O00213 710 aa21.92■■□□□ 1.1
CLIP1-215ENST00000541108 C4AP0C0L4 1744 aa21.92■■□□□ 1.1
CLIP1-215ENST00000541108 PDE8AO60658 829 aa21.91■■□□□ 1.1
CLIP1-215ENST00000541108 PTPN12Q05209 780 aaKnown RBP21.91■■□□□ 1.1
CLIP1-215ENST00000541108 G3BP1Q13283 466 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLIP1-215ENST00000541108 SMIM5Q71RC9 77 aa21.91■■□□□ 1.1
CLIP1-215ENST00000541108 RHPN1Q8TCX5 695 aa21.91■■□□□ 1.1
CLIP1-215ENST00000541108 PHF14O94880 888 aa21.91■■□□□ 1.1
CLIP1-215ENST00000541108 NTSR2O95665 410 aa21.91■■□□□ 1.1
CLIP1-215ENST00000541108 SRP68Q9UHB9 627 aaKnown RBP21.91■■□□□ 1.1
CLIP1-215ENST00000541108 PA2G4Q9UQ80 394 aaKnown RBP21.91■■□□□ 1.1
CLIP1-215ENST00000541108 SMARCA5O60264 1052 aaPredicted RBP21.9■■□□□ 1.1
CLIP1-215ENST00000541108 OS9Q13438 667 aaPredicted RBP21.9■■□□□ 1.1
CLIP1-215ENST00000541108 TBC1D9BQ66K14 1250 aa21.9■■□□□ 1.1
CLIP1-215ENST00000541108 SYNE4Q8N205 404 aa21.9■■□□□ 1.1
CLIP1-215ENST00000541108 SETDB2Q96T68 719 aa21.9■■□□□ 1.1
CLIP1-215ENST00000541108 PLEKHM2Q8IWE5 1019 aa21.89■■□□□ 1.1
CLIP1-215ENST00000541108 TTLL11Q8NHH1 800 aa21.89■■□□□ 1.1
CLIP1-215ENST00000541108 AKT1S1Q96B36 256 aa21.89■■□□□ 1.1
CLIP1-215ENST00000541108 CHMP3Q9Y3E7 222 aa21.89■■□□□ 1.1
CLIP1-215ENST00000541108 MYH3P11055 1940 aa21.89■■□□□ 1.09
CLIP1-215ENST00000541108 CTSWP56202 376 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 CCDC57Q2TAC2 916 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 NYXQ9GZU5 481 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 FBXO3Q9UK99 471 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 C16orf71Q8IYS4 520 aaPredicted RBP21.88■■□□□ 1.09
CLIP1-215ENST00000541108 FLAD1Q8NFF5 587 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 CAMKK2Q96RR4 588 aa21.88■■□□□ 1.09
CLIP1-215ENST00000541108 OSBPL3Q9H4L5 887 aa21.87■■□□□ 1.09
CLIP1-215ENST00000541108 TFCP2L1Q9NZI6 479 aa21.87■■□□□ 1.09
CLIP1-215ENST00000541108 IFIT5Q13325 482 aaKnown RBP21.86■■□□□ 1.09
CLIP1-215ENST00000541108 SF3B2Q13435 895 aaKnown RBP21.86■■□□□ 1.09
CLIP1-215ENST00000541108 FAM161AQ3B820 660 aa21.86■■□□□ 1.09
CLIP1-215ENST00000541108 KLHDC4Q8TBB5 520 aa21.86■■□□□ 1.09
CLIP1-215ENST00000541108 SASH1O94885 1247 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 BMP2KLQ5H9B9 411 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 SLC10A5Q5PT55 438 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 TPTE2Q6XPS3 522 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 CLASRPQ8N2M8 674 aaKnown RBP21.85■■□□□ 1.09
CLIP1-215ENST00000541108 COL24A1Q17RW2 1714 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 SALL3Q9BXA9 1300 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 FAM177BA6PVY3 158 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 BICDL1Q6ZP65 573 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 IL1RAPL2Q9NP60 686 aa21.85■■□□□ 1.09
CLIP1-215ENST00000541108 CIAO1O76071 339 aa21.84■■□□□ 1.09
CLIP1-215ENST00000541108 GYS1P13807 737 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms