RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 TEX2Q8IWB9 1127 aa11.77□□□□□ -0.52
CLIP1-212ENST00000540304 RILPL2Q969X0 211 aa11.77□□□□□ -0.52
CLIP1-212ENST00000540304 KAT6BQ8WYB5 2073 aa11.77□□□□□ -0.52
CLIP1-212ENST00000540304 TTC41PQ6P2S7 1318 aa11.77□□□□□ -0.52
CLIP1-212ENST00000540304 A0A087WZG4 1122 aa11.77□□□□□ -0.53
CLIP1-212ENST00000540304 G3BP1Q13283 466 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLIP1-212ENST00000540304 EPHA10Q5JZY3 1008 aa11.77□□□□□ -0.53
CLIP1-212ENST00000540304 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.77□□□□□ -0.53
CLIP1-212ENST00000540304 CASP7P55210 303 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 RABL6Q3YEC7 729 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-212ENST00000540304 NUTM2BA6NNL0 878 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-212ENST00000540304 NUTM2EB1AL46 878 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-212ENST00000540304 STARD3NLO95772 234 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 CHMLP26374 656 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 NUTM2AQ8IVF1 878 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-212ENST00000540304 DNAJC10Q8IXB1 793 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 GPATCH3Q96I76 525 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 ESYT1Q9BSJ8 1104 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 ANTXR1Q9H6X2 564 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 CWC25Q9NXE8 425 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-212ENST00000540304 SLIT2O94813 1529 aa11.76□□□□□ -0.53
CLIP1-212ENST00000540304 IFIT2P09913 472 aaKnown RBP11.75□□□□□ -0.53
CLIP1-212ENST00000540304 UNC5CLQ8IV45 518 aa11.75□□□□□ -0.53
CLIP1-212ENST00000540304 RBM42Q9BTD8 480 aaKnown RBP11.75□□□□□ -0.53
CLIP1-212ENST00000540304 ZBTB3Q9H5J0 574 aa11.75□□□□□ -0.53
CLIP1-212ENST00000540304 H7C1W4 665 aa11.75□□□□□ -0.53
CLIP1-212ENST00000540304 GLRX3O76003 335 aaKnown RBP11.75□□□□□ -0.53
CLIP1-212ENST00000540304 SASH1O94885 1247 aa11.75□□□□□ -0.53
CLIP1-212ENST00000540304 JARID2Q92833 1246 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-212ENST00000540304 COPRSQ9NQ92 184 aa11.75□□□□□ -0.53
CLIP1-212ENST00000540304 CHRM1P11229 460 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-212ENST00000540304 RABEP1Q15276 862 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 DDB1Q16531 1140 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 AACSQ86V21 672 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 CNTROBQ8N137 903 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 CCDC191Q8NCU4 936 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 ECHDC1Q9NTX5 307 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 NFKBIBQ15653 356 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 ZNF830Q96NB3 372 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-212ENST00000540304 SIL1Q9H173 461 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 RFX5P48382 616 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-212ENST00000540304 KIF6Q6ZMV9 814 aa11.74□□□□□ -0.53
CLIP1-212ENST00000540304 SYTL4Q96C24 671 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-212ENST00000540304 KLHDC4Q8TBB5 520 aa11.73□□□□□ -0.53
CLIP1-212ENST00000540304 MAP4K4O95819 1239 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-212ENST00000540304 PRIM1P49642 420 aaKnown RBP11.73□□□□□ -0.53
CLIP1-212ENST00000540304 PTPN12Q05209 780 aaKnown RBP11.73□□□□□ -0.53
CLIP1-212ENST00000540304 BARGINQ6ZT62 677 aa11.73□□□□□ -0.53
CLIP1-212ENST00000540304 ISCA1Q9BUE6 129 aa11.73□□□□□ -0.53
CLIP1-212ENST00000540304 UBAP1LF5GYI3 381 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 CD2BP2O95400 341 aaKnown RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 FOXO4P98177 505 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 TCIRG1Q13488 830 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 GSE1Q14687 1217 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 CNPY4Q8N129 248 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 EAF2Q96CJ1 260 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 RRAGDQ9NQL2 400 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 BCCIPQ9P287 314 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 ZNF330Q9Y3S2 320 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 K7ELQ4 463 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 EPB41L2O43491 1005 aaKnown RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 CYP19A1P11511 503 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 LMBR1LQ6UX01 489 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 SLC4A9Q96Q91 983 aa11.72□□□□□ -0.53
CLIP1-212ENST00000540304 CCDC9Q9Y3X0 531 aaKnown RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-212ENST00000540304 ANKRD36CQ5JPF3 1778 aa11.71□□□□□ -0.53
CLIP1-212ENST00000540304 FRAT2O75474 233 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-212ENST00000540304 MCCP23508 829 aa11.71□□□□□ -0.53
CLIP1-212ENST00000540304 ANO2Q9NQ90 1003 aa11.71□□□□□ -0.53
CLIP1-212ENST00000540304 MAP3K15Q6ZN16 1313 aa11.71□□□□□ -0.54
CLIP1-212ENST00000540304 TRIM28Q13263 835 aaKnown RBP11.71□□□□□ -0.54
CLIP1-212ENST00000540304 FOXD4L1Q9NU39 408 aa11.71□□□□□ -0.54
CLIP1-212ENST00000540304 KCNG1Q9UIX4 513 aa11.71□□□□□ -0.54
CLIP1-212ENST00000540304 MARCH10Q8NA82 808 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-212ENST00000540304 CCDC8Q9H0W5 538 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-212ENST00000540304 CHMP5Q9NZZ3 219 aa11.7□□□□□ -0.54
CLIP1-212ENST00000540304 JCADQ9P266 1359 aa11.7□□□□□ -0.54
CLIP1-212ENST00000540304 EVI5LQ96CN4 794 aa11.7□□□□□ -0.54
CLIP1-212ENST00000540304 CHMP3Q9Y3E7 222 aa11.7□□□□□ -0.54
CLIP1-212ENST00000540304 CICQ96RK0 1608 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-212ENST00000540304 VGLL3A8MV65 326 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 NPM3O75607 178 aaKnown RBP11.69□□□□□ -0.54
CLIP1-212ENST00000540304 TLR7Q9NYK1 1049 aaKnown RBP11.69□□□□□ -0.54
CLIP1-212ENST00000540304 SGSM2O43147 1006 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 ST18O60284 1047 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 ANAPC15P60006 121 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 HSP90AB3PQ58FF7 597 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 TNNI3KQ59H18 835 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 GIGYF2Q6Y7W6 1299 aaKnown RBP11.69□□□□□ -0.54
CLIP1-212ENST00000540304 RNF216Q9NWF9 866 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-212ENST00000540304 ZBTB1Q9Y2K1 713 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 FPGT-TNNI3KV9GXZ4 949 aa11.69□□□□□ -0.54
CLIP1-212ENST00000540304 NUP98P52948 1817 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 DDIT3P35638 169 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 TFCP2Q12800 502 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 IL25Q9H293 177 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 DIAPH3Q9NSV4 1193 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms