RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CAMKK2Q96RR4 588 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 CNTNAP4Q9C0A0 1308 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 C4AP0C0L4 1744 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 APBA3O96018 575 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 GNAI1P63096 354 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 IFT57Q9NWB7 429 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 KAT6BQ8WYB5 2073 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 LRP5O75197 1615 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 HSP90AA1P07900 732 aaKnown RBP9.09□□□□□ -0.95
CLIP1-205ENST00000514271 TTC5Q8N0Z6 440 aa9.09□□□□□ -0.95
CLIP1-205ENST00000514271 BRD1O95696 1058 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 EXOSC9Q06265 439 aaKnown RBP9.08□□□□□ -0.96
CLIP1-205ENST00000514271 KIAA1211Q6ZU35 1233 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 TMEM63CQ9P1W3 806 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 TRIM37O94972 964 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 CLSTN1O94985 981 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 PRIM1P49642 420 aaKnown RBP9.08□□□□□ -0.96
CLIP1-205ENST00000514271 MAP7D2Q96T17 732 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 CASZ1Q86V15 1759 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 LRSAM1Q6UWE0 723 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 SLC16A10Q8TF71 515 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 KCNB2Q92953 911 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 FMNL2Q96PY5 1086 aa9.08□□□□□ -0.96
CLIP1-205ENST00000514271 RBM42Q9BTD8 480 aaKnown RBP9.08□□□□□ -0.96
CLIP1-205ENST00000514271 TTC22Q5TAA0 569 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 A0A087WZG4 1122 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 PSMD1Q99460 953 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 KCND1Q9NSA2 647 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 HEG1Q9ULI3 1381 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 UBR3Q6ZT12 1888 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 MYRIPQ8NFW9 859 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 PIGBQ92521 554 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 PHACTR3Q96KR7 559 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 STK32BQ9NY57 414 aa9.07□□□□□ -0.96
CLIP1-205ENST00000514271 TXNRD1Q16881 649 aa9.06□□□□□ -0.96
CLIP1-205ENST00000514271 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.06□□□□□ -0.96
CLIP1-205ENST00000514271 IL17REQ8NFR9 667 aa9.06□□□□□ -0.96
CLIP1-205ENST00000514271 TSR2Q969E8 191 aaKnown RBP9.06□□□□□ -0.96
CLIP1-205ENST00000514271 HMGN5P82970 282 aaKnown RBP9.06□□□□□ -0.96
CLIP1-205ENST00000514271 BTBD11A6QL63 1104 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 RAD21O60216 631 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 NCLP19338 710 aaKnown RBP9.05□□□□□ -0.96
CLIP1-205ENST00000514271 MPRIPQ6WCQ1 1025 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 CNPY4Q8N129 248 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 ATG3Q9NT62 314 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 BCORQ6W2J9 1755 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 SCN7AQ01118 1682 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 STARD3NLO95772 234 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 FKBP5Q13451 457 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-205ENST00000514271 ZNF790Q6PG37 636 aa9.05□□□□□ -0.96
CLIP1-205ENST00000514271 CCNL1Q9UK58 526 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-205ENST00000514271 LOC102724428A0A0B4J2F2 783 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 CHL1O00533 1208 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 AP5Z1O43299 807 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 NASPP49321 788 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 SIK1P57059 783 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 SNRKQ9NRH2 765 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 SNRPA1P09661 255 aaKnown RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 RBM43Q6ZSC3 357 aaKnown RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 USP42Q9H9J4 1324 aaKnown RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 CNGB1Q14028 1251 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 RABEP1Q15276 862 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 SYCP1Q15431 976 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 KCTD17Q8N5Z5 321 aa9.04□□□□□ -0.96
CLIP1-205ENST00000514271 INTS4Q96HW7 963 aaKnown RBP9.04□□□□□ -0.96
CLIP1-205ENST00000514271 ACSBG1Q96GR2 724 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 CCDC94Q9BW85 323 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-205ENST00000514271 ANKRD44Q8N8A2 993 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 NFATC2IPQ8NCF5 419 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 SYTL4Q96C24 671 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-205ENST00000514271 PRDM16Q9HAZ2 1276 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 MTMR7Q9Y216 660 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 MTERF4Q7Z6M4 381 aaKnown RBP9.03□□□□□ -0.96
CLIP1-205ENST00000514271 GBP4Q96PP9 640 aa9.03□□□□□ -0.96
CLIP1-205ENST00000514271 FOXD4L5Q5VV16 416 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 HSCBQ8IWL3 235 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 ZNF526Q8TF50 670 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 FOXD4L4Q8WXT5 416 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 PIBF1Q8WXW3 757 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 AKT1S1Q96B36 256 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 TTC14Q96N46 770 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 STAP2Q9UGK3 403 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 ADCY9O60503 1353 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 MFAP1P55081 439 aaKnown RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 FAM177A1Q8N128 213 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 RGS22Q8NE09 1264 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 KCNF1Q9H3M0 494 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 LGR6Q9HBX8 967 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 TSPYL4Q9UJ04 414 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 RRP7AQ9Y3A4 280 aaKnown RBP9.02□□□□□ -0.97
CLIP1-205ENST00000514271 SPEF2Q9C093 1822 aa9.02□□□□□ -0.97
CLIP1-205ENST00000514271 SASS6Q6UVJ0 657 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 TSPYL6Q8N831 410 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 KCNQ2O43526 872 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 RPS6KA4O75676 772 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 IL6STP40189 918 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-205ENST00000514271 SLC15A2Q16348 729 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 AK7Q96M32 723 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 ATP6V1AP38606 617 aa9.01□□□□□ -0.97
CLIP1-205ENST00000514271 AOX1Q06278 1338 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms