RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 BECN1Q14457 450 aa10.28□□□□□ -0.76
RNF4-220ENST00000513578 GIGYF2Q6Y7W6 1299 aaKnown RBP10.28□□□□□ -0.76
RNF4-220ENST00000513578 KIF6Q6ZMV9 814 aa10.28□□□□□ -0.76
RNF4-220ENST00000513578 CLASRPQ8N2M8 674 aaKnown RBP10.28□□□□□ -0.76
RNF4-220ENST00000513578 PLA2G12BQ9BX93 195 aa10.28□□□□□ -0.76
RNF4-220ENST00000513578 BCORQ6W2J9 1755 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 ATP5J2-PTCD1G3V325 749 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 ONECUT3O60422 494 aaPredicted RBP10.27□□□□□ -0.77
RNF4-220ENST00000513578 FOXO4P98177 505 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 G3BP1Q13283 466 aaKnown RBP eCLIP10.27□□□□□ -0.77
RNF4-220ENST00000513578 EPHA10Q5JZY3 1008 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 PI4K2BQ8TCG2 481 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 C8orf37Q96NL8 207 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 CCDC9Q9Y3X0 531 aaKnown RBP10.27□□□□□ -0.77
RNF4-220ENST00000513578 BTAF1O14981 1849 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 CDHR2Q9BYE9 1310 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 LY75O60449 1722 aa10.27□□□□□ -0.77
RNF4-220ENST00000513578 LAMB2P55268 1798 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 ATRNO75882 1429 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 GLRX3O76003 335 aaKnown RBP10.26□□□□□ -0.77
RNF4-220ENST00000513578 SASH1O94885 1247 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 PCCAP05165 728 aaPredicted RBP10.26□□□□□ -0.77
RNF4-220ENST00000513578 EIF5P55010 431 aaKnown RBP10.26□□□□□ -0.77
RNF4-220ENST00000513578 PTPN12Q05209 780 aaKnown RBP10.26□□□□□ -0.77
RNF4-220ENST00000513578 OS9Q13438 667 aaPredicted RBP10.26□□□□□ -0.77
RNF4-220ENST00000513578 ERICH6Q7L0X2 663 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 UBE3BQ7Z3V4 1068 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 IL27Q8NEV9 243 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 ZBTB3Q9H5J0 574 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 IL1RAPL2Q9NP60 686 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 USP21Q9UK80 565 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 FBXO3Q9UK99 471 aa10.26□□□□□ -0.77
RNF4-220ENST00000513578 LOC102724428A0A0B4J2F2 783 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 ERC2O15083 957 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 REC8O95072 547 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 SIK1P57059 783 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 FAM98CQ17RN3 349 aaKnown RBP10.25□□□□□ -0.77
RNF4-220ENST00000513578 INTS5Q6P9B9 1019 aaKnown RBP10.25□□□□□ -0.77
RNF4-220ENST00000513578 SNX21Q969T3 373 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 SYTL4Q96C24 671 aaPredicted RBP10.25□□□□□ -0.77
RNF4-220ENST00000513578 GPATCH3Q96I76 525 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 GPR108Q9NPR9 543 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 ECHDC1Q9NTX5 307 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 CCDC87Q9NVE4 849 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 ZBTB1Q9Y2K1 713 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 TAF1LQ8IZX4 1826 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 PALLDQ8WX93 1383 aa10.25□□□□□ -0.77
RNF4-220ENST00000513578 CIAO1O76071 339 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 CSF1RP07333 972 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 TICAM2Q86XR7 235 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 NUTM1Q86Y26 1132 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 ZBTB38Q8NAP3 1195 aaPredicted RBP10.24□□□□□ -0.77
RNF4-220ENST00000513578 IL17RAQ96F46 866 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 AK7Q96M32 723 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 USP26Q9BXU7 913 aa10.24□□□□□ -0.77
RNF4-220ENST00000513578 DAXXQ9UER7 740 aaPredicted RBP10.24□□□□□ -0.77
RNF4-220ENST00000513578 PA2G4Q9UQ80 394 aaKnown RBP10.24□□□□□ -0.77
RNF4-220ENST00000513578 IFIT2P09913 472 aaKnown RBP10.23□□□□□ -0.77
RNF4-220ENST00000513578 CHMLP26374 656 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 ATP6V1AP38606 617 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 LMBR1LQ6UX01 489 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 NLRP10Q86W26 655 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 ZNF34Q8IZ26 560 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 CNTROBQ8N137 903 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 EAF2Q96CJ1 260 aaPredicted RBP10.23□□□□□ -0.77
RNF4-220ENST00000513578 GJD4Q96KN9 370 aaPredicted RBP10.23□□□□□ -0.77
RNF4-220ENST00000513578 KIF2CQ99661 725 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 ANP32EQ9BTT0 268 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 SPEF2Q9C093 1822 aa10.23□□□□□ -0.77
RNF4-220ENST00000513578 IL15P40933 162 aaPredicted RBP10.22□□□□□ -0.77
RNF4-220ENST00000513578 CRKLP46109 303 aaKnown RBP10.22□□□□□ -0.77
RNF4-220ENST00000513578 ITPK1Q13572 414 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 RC3H1Q5TC82 1133 aaKnown RBP10.22□□□□□ -0.77
RNF4-220ENST00000513578 AACSQ86V21 672 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 DZIP3Q86Y13 1208 aaKnown RBP10.22□□□□□ -0.77
RNF4-220ENST00000513578 ACSBG1Q96GR2 724 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 ESYT1Q9BSJ8 1104 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 TRPC5Q9UL62 973 aaPredicted RBP10.22□□□□□ -0.77
RNF4-220ENST00000513578 CNTNAP4Q9C0A0 1308 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 SCN7AQ01118 1682 aa10.22□□□□□ -0.77
RNF4-220ENST00000513578 DDX60Q8IY21 1712 aaKnown RBP10.21□□□□□ -0.77
RNF4-220ENST00000513578 EYA2O00167 538 aa10.21□□□□□ -0.77
RNF4-220ENST00000513578 HLFQ16534 295 aa10.21□□□□□ -0.77
RNF4-220ENST00000513578 EVI5LQ96CN4 794 aa10.21□□□□□ -0.77
RNF4-220ENST00000513578 TBC1D2Q9BYX2 928 aa10.21□□□□□ -0.77
RNF4-220ENST00000513578 AFF2P51816 1311 aa10.21□□□□□ -0.78
RNF4-220ENST00000513578 RFX7Q2KHR2 1363 aa10.21□□□□□ -0.78
RNF4-220ENST00000513578 TRIM6-TRIM34B2RNG4 842 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 HIP1O00291 1037 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 KCNQ2O43526 872 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 ATP5JP18859 108 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 ANAPC15P60006 121 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 RABEP1Q15276 862 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 PARP10Q53GL7 1025 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 TNNI3KQ59H18 835 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 MEX3CQ5U5Q3 659 aaKnown RBP10.2□□□□□ -0.78
RNF4-220ENST00000513578 ZNF772Q68DY9 489 aaPredicted RBP10.2□□□□□ -0.78
RNF4-220ENST00000513578 CLEC4GQ6UXB4 293 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 ATG9AQ7Z3C6 839 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 JARID2Q92833 1246 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 357.2 ms