RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 A0A087WZG4 1122 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 POTEDQ86YR6 584 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC50Q8IVM0 306 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 LARP6Q9BRS8 491 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 SERPINA10Q9UK55 444 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 KLHL10Q6JEL2 608 aa10.02□□□□□ -0.8
LIMCH1-218ENST00000513024 PARD3Q8TEW0 1356 aa10.02□□□□□ -0.8
LIMCH1-218ENST00000513024 ZNF830Q96NB3 372 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-218ENST00000513024 LACTBP83111 547 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 RPAP2Q8IXW5 612 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 ANO10Q9NW15 660 aa10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 OPA1O60313 960 aa10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 BAG4O95429 457 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 FKBP4Q02790 459 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 TTC39AQ5SRH9 613 aa10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 SCAND2PQ9GZW5 306 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 GOPCQ9HD26 462 aa10.02□□□□□ -0.81
LIMCH1-218ENST00000513024 MBD5Q9P267 1494 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 SSBP05455 408 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 TOP1P11387 765 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 PPP1R12CQ9BZL4 782 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 VCXQ9H320 206 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 ADAMTS12P58397 1594 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC69A6NI79 296 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 PRPF40BQ6NWY9 871 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 ZKSCAN5Q9Y2L8 839 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 SOGA3Q5TF21 947 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 CEP128Q6ZU80 1094 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 CPLX3Q8WVH0 158 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 DNAI2Q9GZS0 605 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 ADGRL2O95490 1459 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 USO1O60763 962 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 CETN2P41208 172 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 DNA2P51530 1060 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 DIXDC1Q155Q3 683 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 RPUSD2Q8IZ73 545 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 TAOK3Q9H2K8 898 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 ZSWIM4Q9H7M6 989 aa10.01□□□□□ -0.81
LIMCH1-218ENST00000513024 SLU7O95391 586 aaKnown RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 UVSSAQ2YD98 709 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 LRRC59Q96AG4 307 aaKnown RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 TFIP11Q9UBB9 837 aaKnown RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 HCLS1P14317 486 aaPredicted RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 GUCY1B3Q02153 619 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 PDE1CQ14123 709 aaPredicted RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 ZNF365Q70YC5 407 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 ARFGAP2Q8N6H7 521 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 VPS18Q9P253 973 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 RAPGEF6Q8TEU7 1601 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 BCORL1Q5H9F3 1711 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 FSD2A1L4K1 749 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 LMOD1P29536 600 aaPredicted RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 INPP5BP32019 993 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 B4GALNT4Q76KP1 1039 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 THUMPD2Q9BTF0 503 aaKnown RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 TMOD3Q9NYL9 352 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 RARSP54136 660 aaKnown RBP10□□□□□ -0.81
LIMCH1-218ENST00000513024 KRT32Q14532 448 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 CACNA2D3Q8IZS8 1091 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 MICAL1Q8TDZ2 1067 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 PIBF1Q8WXW3 757 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 SSH1Q8WYL5 1049 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 CNNM1Q9NRU3 951 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 RABGAP1Q9Y3P9 1069 aa10□□□□□ -0.81
LIMCH1-218ENST00000513024 TRIM21P19474 475 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 KLHL40Q2TBA0 621 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 TESK2Q96S53 571 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 SMC6Q96SB8 1091 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 NOL7Q9UMY1 257 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 C8orf37Q96NL8 207 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 KIAA0556O60303 1618 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 ARHGEF12Q9NZN5 1544 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 TUBB4AP04350 444 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 MX1P20591 662 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 BIN1O00499 593 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 PPP1R12BO60237 982 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 CDKL5O76039 1030 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 ZNF165P49910 485 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 GNG11P61952 73 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC38Q502W7 563 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 HS1BP3Q53T59 392 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 RPGRQ92834 1020 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 MPHOSPH6Q99547 160 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 MPHOSPH8Q99549 860 aa9.99□□□□□ -0.81
LIMCH1-218ENST00000513024 BUB1BO60566 1050 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 ZSCAN23Q3MJ62 389 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 ZSCAN29Q8IWY8 852 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 NACAP1Q9BZK3 213 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 MYO1BO43795 1136 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC172P0C7W6 258 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 MXRA7P84157 204 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 HOOK3Q86VS8 718 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 RAB3IL1Q8TBN0 382 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 CWC25Q9NXE8 425 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 ATP2B2Q01814 1243 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC174Q6PII3 467 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 TMC6Q7Z403 805 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 PUS7Q96PZ0 661 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 NPHP3Q7Z494 1330 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms