RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 RNFT1Q5M7Z0 435 aa7.53□□□□□ -1.2
VPS41-214ENST00000490924 NLRP3Q96P20 1036 aa7.53□□□□□ -1.2
VPS41-214ENST00000490924 TMPRSS4Q9NRS4 437 aa7.53□□□□□ -1.2
VPS41-214ENST00000490924 MAPK8IP3Q9UPT6 1336 aa7.52□□□□□ -1.2
VPS41-214ENST00000490924 ERVK-7P63135 1459 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 PLEKHH1Q9ULM0 1364 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 SLC27A3Q5K4L6 730 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 RNF20Q5VTR2 975 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 PRICKLE2Q7Z3G6 844 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 BEND7Q8N7W2 519 aaPredicted RBP7.52□□□□□ -1.21
VPS41-214ENST00000490924 ZNF330Q9Y3S2 320 aaPredicted RBP7.52□□□□□ -1.21
VPS41-214ENST00000490924 MROH1Q8NDA8 1641 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 ADGRB3O60242 1522 aa7.52□□□□□ -1.21
VPS41-214ENST00000490924 ATP5J2-PTCD1G3V325 749 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 ERVH48-1M5A8F1 160 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 MEN1O00255 615 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 RGL3Q3MIN7 710 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 CC2D1BQ5T0F9 858 aaKnown RBP7.51□□□□□ -1.21
VPS41-214ENST00000490924 FBXO41Q8TF61 875 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 IFT172Q9UG01 1749 aa7.51□□□□□ -1.21
VPS41-214ENST00000490924 CFAP74Q9C0B2 1584 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 ZNF518AQ6AHZ1 1483 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 LOC100996750A0A140TA64 210 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 ARHGEF15O94989 841 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 GTF2E1P29083 439 aaPredicted RBP7.5□□□□□ -1.21
VPS41-214ENST00000490924 FAM69CQ0P6D2 419 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 CRBNQ96SW2 442 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 KRTAP4-6Q9BYQ5 205 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 CYLDQ9NQC7 956 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 MBIPQ9NS73 344 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 PCDHB9Q9Y5E1 797 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 ERCC6L2Q5T890 1561 aa7.5□□□□□ -1.21
VPS41-214ENST00000490924 MLH3Q9UHC1 1453 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 USP17L8P0C7I0 530 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 WDR63Q8IWG1 891 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 WHAMMQ8TF30 809 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 GAS2L1Q99501 681 aaPredicted RBP7.49□□□□□ -1.21
VPS41-214ENST00000490924 ZFYVE9O95405 1425 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 ABCA6Q8N139 1617 aa7.49□□□□□ -1.21
VPS41-214ENST00000490924 CELA2BP08218 269 aaPredicted RBP7.48□□□□□ -1.21
VPS41-214ENST00000490924 RHOQP17081 205 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 GPC1P35052 558 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 GSK3AP49840 483 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 RNF144AP50876 292 aaPredicted RBP7.48□□□□□ -1.21
VPS41-214ENST00000490924 MCCD1P59942 119 aaPredicted RBP7.48□□□□□ -1.21
VPS41-214ENST00000490924 ARHGAP31Q2M1Z3 1444 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 TRIM22Q8IYM9 498 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 GALNT6Q8NCL4 622 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 PROCA1Q8NCQ7 364 aaPredicted RBP7.48□□□□□ -1.21
VPS41-214ENST00000490924 MED14O60244 1454 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 IQSEC2Q5JU85 1478 aa7.48□□□□□ -1.21
VPS41-214ENST00000490924 ADGRB1O14514 1584 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 HECW2Q9P2P5 1572 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 MSTNO14793 375 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 C8orf34Q49A92 452 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 TMEM259Q4ZIN3 620 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 FOXD4L5Q5VV16 416 aaPredicted RBP7.47□□□□□ -1.21
VPS41-214ENST00000490924 LYPD4Q6UWN0 246 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 PMFBP1Q8TBY8 1022 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 PCMTD1Q96MG8 357 aaPredicted RBP7.47□□□□□ -1.21
VPS41-214ENST00000490924 KDM4CQ9H3R0 1056 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 LMTK3Q96Q04 1460 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 KIF1BO60333 1816 aa7.47□□□□□ -1.21
VPS41-214ENST00000490924 NEFMP07197 916 aa7.46□□□□□ -1.22
VPS41-214ENST00000490924 BCRP11274 1271 aa7.46□□□□□ -1.22
VPS41-214ENST00000490924 CYP2U1Q7Z449 544 aa7.46□□□□□ -1.22
VPS41-214ENST00000490924 CENPJQ9HC77 1338 aaPredicted RBP7.46□□□□□ -1.22
VPS41-214ENST00000490924 PPRC1Q5VV67 1664 aaKnown RBP7.45□□□□□ -1.22
VPS41-214ENST00000490924 SENP3-EIF4A1A0A087X0R7 540 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 ZBBXA8MT70 800 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 ESPNB1AK53 854 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 LILRA1O75019 489 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 MX2P20592 715 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 ADD1P35611 737 aaKnown RBP7.45□□□□□ -1.22
VPS41-214ENST00000490924 CLUAP1Q96AJ1 413 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 RUNDC1Q96C34 613 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS41-214ENST00000490924 C14orf93Q9H972 538 aaKnown RBP7.45□□□□□ -1.22
VPS41-214ENST00000490924 PHF24Q9UPV7 400 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 DYRK1BQ9Y463 629 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 IL16Q14005 1332 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 ABCC11Q96J66 1382 aa7.45□□□□□ -1.22
VPS41-214ENST00000490924 ZC3H13Q5T200 1668 aaKnown RBP7.44□□□□□ -1.22
VPS41-214ENST00000490924 NOS1P29475 1434 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 BECN1Q14457 450 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 CC2D2BQ6DHV5 1058 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 ZNF428Q96B54 188 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 ZNF837Q96EG3 531 aaPredicted RBP7.44□□□□□ -1.22
VPS41-214ENST00000490924 ADGRB2O60241 1585 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 ANKRD36BQ8N2N9 1353 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 POGZQ7Z3K3 1410 aa7.44□□□□□ -1.22
VPS41-214ENST00000490924 NEO1Q92859 1461 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 VIRMAQ69YN4 1812 aaKnown RBP7.43□□□□□ -1.22
VPS41-214ENST00000490924 ABCC3O15438 1527 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 PIK3C2BO00750 1634 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 APBB1O00213 710 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 PIK3R2O00459 728 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 PLIN1O60240 522 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 EIF5BO60841 1220 aaKnown RBP7.43□□□□□ -1.22
VPS41-214ENST00000490924 C20orf194Q5TEA3 1177 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms