RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 RAB11FIP3O75154 756 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 SURF6O75683 361 aaKnown RBP12.41□□□□□ -0.42
USP11-211ENST00000489111 PHF14O94880 888 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 ADRA2BP18089 450 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 CLEC4GQ6UXB4 293 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 ZNF34Q8IZ26 560 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 KAZALD1Q96I82 304 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 CHMP3Q9Y3E7 222 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 SBF2Q86WG5 1849 aa12.41□□□□□ -0.42
USP11-211ENST00000489111 UBN2Q6ZU65 1347 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 LY75O60449 1722 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 PLSCR1O15162 318 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 HSP90B1P14625 803 aaKnown RBP12.4□□□□□ -0.42
USP11-211ENST00000489111 RFC4P35249 363 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 RABL6Q3YEC7 729 aaPredicted RBP12.4□□□□□ -0.42
USP11-211ENST00000489111 EPHA10Q5JZY3 1008 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 TRAPPC3LQ5T215 181 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 FAM89AQ96GI7 184 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 BCL11AQ9H165 835 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 NARFQ9UHQ1 456 aa12.4□□□□□ -0.42
USP11-211ENST00000489111 NIP7Q9Y221 180 aaKnown RBP eCLIP12.4□□□□□ -0.42
USP11-211ENST00000489111 C4BP0C0L5 1744 aa12.4□□□□□ -0.43
USP11-211ENST00000489111 CDHR2Q9BYE9 1310 aa12.39□□□□□ -0.43
USP11-211ENST00000489111 PDE4AP27815 886 aa12.39□□□□□ -0.43
USP11-211ENST00000489111 LMBR1LQ6UX01 489 aa12.39□□□□□ -0.43
USP11-211ENST00000489111 ERC1Q8IUD2 1116 aa12.39□□□□□ -0.43
USP11-211ENST00000489111 UTP14AQ9BVJ6 771 aaKnown RBP12.39□□□□□ -0.43
USP11-211ENST00000489111 SH3TC1Q8TE82 1336 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 FAM177BA6PVY3 158 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 IRS4O14654 1257 aaPredicted RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 SSFA2P28290 1259 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 FOXO4P98177 505 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 G3BP1Q13283 466 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP11-211ENST00000489111 SF3B2Q13435 895 aaKnown RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 USPL1Q5W0Q7 1092 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 ARHGEF1Q92888 912 aaKnown RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 KIF1BPQ96EK5 621 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 PLA2G12BQ9BX93 195 aa12.38□□□□□ -0.43
USP11-211ENST00000489111 SRP68Q9UHB9 627 aaKnown RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 NOP58Q9Y2X3 529 aaKnown RBP12.38□□□□□ -0.43
USP11-211ENST00000489111 USP42Q9H9J4 1324 aaKnown RBP12.37□□□□□ -0.43
USP11-211ENST00000489111 SMARCA5O60264 1052 aaPredicted RBP12.37□□□□□ -0.43
USP11-211ENST00000489111 CTSWP56202 376 aa12.37□□□□□ -0.43
USP11-211ENST00000489111 SUSD4Q5VX71 490 aa12.37□□□□□ -0.43
USP11-211ENST00000489111 SMIM5Q71RC9 77 aa12.37□□□□□ -0.43
USP11-211ENST00000489111 PA2G4Q9UQ80 394 aaKnown RBP12.37□□□□□ -0.43
USP11-211ENST00000489111 SCN7AQ01118 1682 aa12.37□□□□□ -0.43
USP11-211ENST00000489111 AFDNP55196 1824 aaKnown RBP12.37□□□□□ -0.43
USP11-211ENST00000489111 BICDL1Q6ZP65 573 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 ILDR1Q86SU0 546 aaPredicted RBP12.36□□□□□ -0.43
USP11-211ENST00000489111 AMIGO3Q86WK7 504 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 PROM2Q8N271 834 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 RHPN1Q8TCX5 695 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 SETDB2Q96T68 719 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 SIL1Q9H173 461 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 TFCP2L1Q9NZI6 479 aa12.36□□□□□ -0.43
USP11-211ENST00000489111 PDE8AO60658 829 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 NTSR2O95665 410 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 GTF2E1P29083 439 aaPredicted RBP12.35□□□□□ -0.43
USP11-211ENST00000489111 CCDC57Q2TAC2 916 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 FAM161AQ3B820 660 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 TAF7LQ5H9L4 462 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 TBC1D9BQ66K14 1250 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 NYXQ9GZU5 481 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 BCL2L12Q9HB09 334 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 COPRSQ9NQ92 184 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 BCORQ6W2J9 1755 aa12.35□□□□□ -0.43
USP11-211ENST00000489111 MYH14Q7Z406 1995 aaKnown RBP12.34□□□□□ -0.43
USP11-211ENST00000489111 NPHP1O15259 732 aa12.34□□□□□ -0.43
USP11-211ENST00000489111 BAG6P46379 1132 aa12.34□□□□□ -0.43
USP11-211ENST00000489111 RFX5P48382 616 aaPredicted RBP12.34□□□□□ -0.43
USP11-211ENST00000489111 IFIT5Q13325 482 aaKnown RBP12.34□□□□□ -0.43
USP11-211ENST00000489111 NBPF5PQ86XG9 351 aaPredicted RBP12.34□□□□□ -0.43
USP11-211ENST00000489111 SYNE4Q8N205 404 aa12.34□□□□□ -0.43
USP11-211ENST00000489111 CLASRPQ8N2M8 674 aaKnown RBP12.34□□□□□ -0.43
USP11-211ENST00000489111 KLHDC4Q8TBB5 520 aa12.34□□□□□ -0.43
USP11-211ENST00000489111 IL1RAPL2Q9NP60 686 aa12.34□□□□□ -0.43
USP11-211ENST00000489111 ANKRD36CQ5JPF3 1778 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 CARMIL3Q8ND23 1372 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 HCLS1P14317 486 aaPredicted RBP12.33□□□□□ -0.44
USP11-211ENST00000489111 PTPN12Q05209 780 aaKnown RBP12.33□□□□□ -0.44
USP11-211ENST00000489111 ZNF827Q17R98 1081 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 PLEKHM2Q8IWE5 1019 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 C16orf71Q8IYS4 520 aaPredicted RBP12.33□□□□□ -0.44
USP11-211ENST00000489111 FLAD1Q8NFF5 587 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 GPATCH3Q96I76 525 aa12.33□□□□□ -0.44
USP11-211ENST00000489111 CCDC85AQ96PX6 553 aaPredicted RBP12.33□□□□□ -0.44
USP11-211ENST00000489111 TNS1Q9HBL0 1735 aaKnown RBP12.33□□□□□ -0.44
USP11-211ENST00000489111 ANKRD18BA2A2Z9 1011 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 MSH5O43196 834 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 CSF1RP07333 972 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 IFIT2P09913 472 aaKnown RBP12.32□□□□□ -0.44
USP11-211ENST00000489111 MX1P20591 662 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 CCDC152Q4G0S7 254 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 BMP2KLQ5H9B9 411 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 NUTM1Q86Y26 1132 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 TTLL11Q8NHH1 800 aa12.32□□□□□ -0.44
USP11-211ENST00000489111 OTUD7AQ8TE49 926 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms