RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 LTV1Q96GA3 475 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-209ENST00000486618 TERF2IPQ9NYB0 399 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 LY75O60449 1722 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 FAM208AQ9UK61 1670 aaKnown RBP9.42□□□□□ -0.9
HDAC3-209ENST00000486618 USP47Q96K76 1375 aa9.41□□□□□ -0.9
HDAC3-209ENST00000486618 SBNO2Q9Y2G9 1366 aa9.41□□□□□ -0.9
HDAC3-209ENST00000486618 S1PR4O95977 384 aa9.41□□□□□ -0.9
HDAC3-209ENST00000486618 ATP6V1AP38606 617 aa9.41□□□□□ -0.9
HDAC3-209ENST00000486618 ZC3H15Q8WU90 426 aaKnown RBP9.41□□□□□ -0.9
HDAC3-209ENST00000486618 V9GY48 417 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-209ENST00000486618 EDC4Q6P2E9 1401 aaKnown RBP9.4□□□□□ -0.9
HDAC3-209ENST00000486618 ZMYND10O75800 440 aa9.4□□□□□ -0.9
HDAC3-209ENST00000486618 PPEF1O14829 653 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-209ENST00000486618 AMPHP49418 695 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 MSL1Q68DK7 614 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 SLC12A5Q9H2X9 1139 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 GPCPD1Q9NPB8 672 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 SLC27A5Q9Y2P5 690 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 DOT1LQ8TEK3 1739 aa9.39□□□□□ -0.91
HDAC3-209ENST00000486618 CEP350Q5VT06 3117 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 CGNL1Q0VF96 1302 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 KRI1Q8N9T8 703 aaKnown RBP9.38□□□□□ -0.91
HDAC3-209ENST00000486618 ZNF526Q8TF50 670 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-209ENST00000486618 COG3Q96JB2 828 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 SPSB2Q99619 263 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 SLC6A16Q9GZN6 736 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 CD163L1Q9NR16 1453 aa9.38□□□□□ -0.91
HDAC3-209ENST00000486618 NSD2O96028 1365 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 HOXC9P31274 260 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 CLCN1P35523 988 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 ANKLE1Q8NAG6 615 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 RAPGEF4Q8WZA2 1011 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 THAP11Q96EK4 314 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 ADCY9O60503 1353 aa9.37□□□□□ -0.91
HDAC3-209ENST00000486618 DHX37Q8IY37 1157 aaKnown RBP9.36□□□□□ -0.91
HDAC3-209ENST00000486618 EMID1Q96A84 441 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-209ENST00000486618 CARD11Q9BXL7 1154 aa9.36□□□□□ -0.91
HDAC3-209ENST00000486618 A0A1W2PP64 1363 aa9.36□□□□□ -0.91
HDAC3-209ENST00000486618 MAP3K19Q56UN5 1328 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 KDM4AO75164 1064 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 TATP17735 454 aaPredicted RBP9.35□□□□□ -0.91
HDAC3-209ENST00000486618 NEUROD1Q13562 356 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 SMARCC1Q92922 1105 aaPredicted RBP9.35□□□□□ -0.91
HDAC3-209ENST00000486618 AK7Q96M32 723 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 SIN3AQ96ST3 1273 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 POLR3GLQ9BT43 218 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 REPIN1Q9BWE0 567 aaKnown RBP9.35□□□□□ -0.91
HDAC3-209ENST00000486618 FAM217BQ9NTX9 383 aaPredicted RBP9.35□□□□□ -0.91
HDAC3-209ENST00000486618 C5P01031 1676 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 RGPD2P0DJD1 1756 aa9.35□□□□□ -0.91
HDAC3-209ENST00000486618 IGSF1Q8N6C5 1336 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 NSD3Q9BZ95 1437 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 TAF1LQ8IZX4 1826 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 FMNL1O95466 1100 aaPredicted RBP9.34□□□□□ -0.91
HDAC3-209ENST00000486618 GRIPAP1Q4V328 841 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 MPRIPQ6WCQ1 1025 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 MEGF6O75095 1541 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 PALLDQ8WX93 1383 aa9.34□□□□□ -0.91
HDAC3-209ENST00000486618 GOLGB1Q14789 3259 aaKnown RBP9.34□□□□□ -0.91
HDAC3-209ENST00000486618 PCDH11XQ9BZA7 1347 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 PCDH11YQ9BZA8 1340 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 SMG6Q86US8 1419 aaKnown RBP9.33□□□□□ -0.92
HDAC3-209ENST00000486618 NBPF6Q5VWK0 638 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 RNF19BQ6ZMZ0 732 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 NBPF4Q96M43 638 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 RSPH6AQ9H0K4 717 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 SALL2Q9Y467 1007 aaPredicted RBP9.33□□□□□ -0.92
HDAC3-209ENST00000486618 RTL1A6NKG5 1358 aa9.33□□□□□ -0.92
HDAC3-209ENST00000486618 GFRA3O60609 400 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 TOMM70O94826 608 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 SSFA2P28290 1259 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 SLC19A1P41440 591 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 AMHR2Q16671 573 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 BRICD5Q6PL45 260 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 ZMYND15Q9H091 742 aa9.32□□□□□ -0.92
HDAC3-209ENST00000486618 FBLN1P23142 703 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 LAPTM4AQ15012 233 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 PLA2G2CQ5R387 149 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 FAM160A2Q8N612 972 aaPredicted RBP9.31□□□□□ -0.92
HDAC3-209ENST00000486618 USHBP1Q8N6Y0 703 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 HLA-CQ95604 372 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 ARID3AQ99856 593 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 PRDM9Q9NQV7 894 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 WWC3Q9ULE0 1092 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 C4BP0C0L5 1744 aa9.31□□□□□ -0.92
HDAC3-209ENST00000486618 UBR3Q6ZT12 1888 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 HOXA2O43364 376 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 USP46P62068 366 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 RRS1Q15050 365 aaKnown RBP9.3□□□□□ -0.92
HDAC3-209ENST00000486618 Q6ZNB5 142 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 LIAT1Q6ZQX7 453 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 BCCIPQ9P287 314 aaKnown RBP eCLIP9.3□□□□□ -0.92
HDAC3-209ENST00000486618 ITGB4P16144 1822 aa9.3□□□□□ -0.92
HDAC3-209ENST00000486618 CYP27B1O15528 508 aa9.29□□□□□ -0.92
HDAC3-209ENST00000486618 TGFB2P61812 414 aa9.29□□□□□ -0.92
HDAC3-209ENST00000486618 TTLL12Q14166 644 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-209ENST00000486618 SPRYD7Q5W111 196 aa9.29□□□□□ -0.92
HDAC3-209ENST00000486618 DNAJC5GQ8N7S2 189 aa9.29□□□□□ -0.92
HDAC3-209ENST00000486618 INSRP06213 1382 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 LOC102724428A0A0B4J2F2 783 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms