RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-204	ENST00000480057	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	TTC41P	Q6P2S7	1318 aa		13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	CDHR2	Q9BYE9	1310 aa		13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	CRKL	P46109	303 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	RFX5	P48382	616 aa	Predicted RBP	13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	FOXO4	P98177	505 aa		13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	EPHA10	Q5JZY3	1008 aa		13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	DZIP3	Q86Y13	1208 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	BTAF1	O14981	1849 aa		13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	CNTNAP4	Q9C0A0	1308 aa		13.54	□□□□□ -0.24
VTI1A-204	ENST00000480057	NUP98	P52948	1817 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057		A0A0G2JS52	829 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	KCNQ2	O43526	872 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	SDS	P20132	328 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	MYT1	Q01538	1121 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	ITPK1	Q13572	414 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	TBC1D9	Q6ZT07	1266 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	FBXO3	Q9UK99	471 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	SBF2	Q86WG5	1849 aa		13.53	□□□□□ -0.24
VTI1A-204	ENST00000480057	RC3H1	Q5TC82	1133 aa	Known RBP	13.52	□□□□□ -0.25
VTI1A-204	ENST00000480057	GPATCH3	Q96I76	525 aa		13.52	□□□□□ -0.25
VTI1A-204	ENST00000480057	AK7	Q96M32	723 aa		13.52	□□□□□ -0.25
VTI1A-204	ENST00000480057	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.52	□□□□□ -0.25
VTI1A-204	ENST00000480057	LY75	O60449	1722 aa		13.52	□□□□□ -0.25
VTI1A-204	ENST00000480057	BCOR	Q6W2J9	1755 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	ERC2	O15083	957 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	RBM25	P49756	843 aa	Known RBP	13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	PTPN12	Q05209	780 aa	Known RBP	13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	LMBR1L	Q6UX01	489 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	NLRP10	Q86W26	655 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	ZNF34	Q8IZ26	560 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	C22orf23	Q9BZE7	217 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	IL1RAPL2	Q9NP60	686 aa		13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	PA2G4	Q9UQ80	394 aa	Known RBP	13.51	□□□□□ -0.25
VTI1A-204	ENST00000480057	GLRX3	O76003	335 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	CIAO1	O76071	339 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	SASH1	O94885	1247 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	HMGB2	P26583	209 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	MFAP1	P55081	439 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	HLF	Q16534	295 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	PARP10	Q53GL7	1025 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	SEPT12	Q8IYM1	358 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	QTRT2	Q9H974	415 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	GPR108	Q9NPR9	543 aa		13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	MYH14	Q7Z406	1995 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-204	ENST00000480057	EPB41L2	O43491	1005 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	CSF1R	P07333	972 aa		13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	IFIT2	P09913	472 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	HSP90B1	P14625	803 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	CLEC4G	Q6UXB4	293 aa		13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	PI4K2B	Q8TCG2	481 aa		13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	ECHDC1	Q9NTX5	307 aa		13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	ZNF652	Q9Y2D9	606 aa		13.49	□□□□□ -0.25
VTI1A-204	ENST00000480057	CAMTA2	O94983	1202 aa		13.48	□□□□□ -0.25
VTI1A-204	ENST00000480057	NUTM1	Q86Y26	1132 aa		13.48	□□□□□ -0.25
VTI1A-204	ENST00000480057	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.48	□□□□□ -0.25
VTI1A-204	ENST00000480057	SCN7A	Q01118	1682 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	MYH3	P11055	1940 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	REC8	O95072	547 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	IL15	P40933	162 aa	Predicted RBP	13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	ZNF772	Q68DY9	489 aa	Predicted RBP	13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	AACS	Q86V21	672 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	LINC00116	Q8NCU8	138 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	JARID2	Q92833	1246 aa	Predicted RBP	13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	TBC1D2B	Q9UPU7	963 aa		13.47	□□□□□ -0.25
VTI1A-204	ENST00000480057	LAMB2	P55268	1798 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	EYA2	O00167	538 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	PDE8A	O60658	829 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	RPS6KA4	O75676	772 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	BECN1	Q14457	450 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	CCDC57	Q2TAC2	916 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	FAM196A	Q6ZSG2	479 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	CNTROB	Q8N137	903 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	ARX	Q96QS3	562 aa		13.46	□□□□□ -0.25
VTI1A-204	ENST00000480057	TAF1L	Q8IZX4	1826 aa		13.46	□□□□□ -0.26
VTI1A-204	ENST00000480057	UBN2	Q6ZU65	1347 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	AK9	Q5TCS8	1911 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	DCAF8L1	A6NGE4	600 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	TNNI3K	Q59H18	835 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	TICAM2	Q86XR7	235 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	EAF2	Q96CJ1	260 aa	Predicted RBP	13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	FAM89A	Q96GI7	184 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	SIL1	Q9H173	461 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	TRMT112	Q9UI30	125 aa	Known RBP	13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	CHMP3	Q9Y3E7	222 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	FPGT-TNNI3K	V9GXZ4	949 aa		13.45	□□□□□ -0.26
VTI1A-204	ENST00000480057	SH3TC1	Q8TE82	1336 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	TRIM6-TRIM34	B2RNG4	842 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	IRS4	O14654	1257 aa	Predicted RBP	13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	GPT	P24298	496 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	CHML	P26374	656 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	CTSW	P56202	376 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	RBM6	P78332	1123 aa	Known RBP	13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	IFIT5	Q13325	482 aa	Known RBP	13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	ATG9A	Q7Z3C6	839 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	KLHDC4	Q8TBB5	520 aa		13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	UTP14A	Q9BVJ6	771 aa	Known RBP	13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	DAXX	Q9UER7	740 aa	Predicted RBP	13.44	□□□□□ -0.26
VTI1A-204	ENST00000480057	CCNL1	Q9UK58	526 aa	Predicted RBP	13.44	□□□□□ -0.26

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