RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 BICC1Q9H694 974 aaKnown RBP15.9■□□□□ 0.14
VPS13D-205ENST00000473099 TUBGCP6Q96RT7 1819 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 RPS6KA4O75676 772 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 PCCAP05165 728 aaPredicted RBP15.89■□□□□ 0.13
VPS13D-205ENST00000473099 CASP7P55210 303 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 RABL6Q3YEC7 729 aaPredicted RBP15.89■□□□□ 0.13
VPS13D-205ENST00000473099 CLEC4GQ6UXB4 293 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 PTF1AQ7RTS3 328 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 ERC1Q8IUD2 1116 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 NOP58Q9Y2X3 529 aaKnown RBP15.89■□□□□ 0.13
VPS13D-205ENST00000473099 CDHR2Q9BYE9 1310 aa15.89■□□□□ 0.13
VPS13D-205ENST00000473099 COL24A1Q17RW2 1714 aa15.88■□□□□ 0.13
VPS13D-205ENST00000473099 PARP10Q53GL7 1025 aa15.88■□□□□ 0.13
VPS13D-205ENST00000473099 LRRCC1Q9C099 1032 aa15.88■□□□□ 0.13
VPS13D-205ENST00000473099 TBC1D2BQ9UPU7 963 aa15.88■□□□□ 0.13
VPS13D-205ENST00000473099 DDX60Q8IY21 1712 aaKnown RBP15.88■□□□□ 0.13
VPS13D-205ENST00000473099 CAMTA2O94983 1202 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 HSP90B1P14625 803 aaKnown RBP15.87■□□□□ 0.13
VPS13D-205ENST00000473099 PDE4AP27815 886 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 HLFQ16534 295 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 NLRP10Q86W26 655 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 ZNF34Q8IZ26 560 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 ZBTB38Q8NAP3 1195 aaPredicted RBP15.87■□□□□ 0.13
VPS13D-205ENST00000473099 KAZALD1Q96I82 304 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 PLA2G12BQ9BX93 195 aa15.87■□□□□ 0.13
VPS13D-205ENST00000473099 RTCBQ9Y3I0 505 aaKnown RBP15.87■□□□□ 0.13
VPS13D-205ENST00000473099 SURF6O75683 361 aaKnown RBP15.86■□□□□ 0.13
VPS13D-205ENST00000473099 TRIM37O94972 964 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 FAM161AQ3B820 660 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 SKAP1Q86WV1 359 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 KIF1BPQ96EK5 621 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 AK7Q96M32 723 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 TSHZ2Q9NRE2 1034 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 EXOC6BQ9Y2D4 811 aa15.86■□□□□ 0.13
VPS13D-205ENST00000473099 PLSCR1O15162 318 aa15.85■□□□□ 0.13
VPS13D-205ENST00000473099 ADRA2BP18089 450 aa15.85■□□□□ 0.13
VPS13D-205ENST00000473099 GNPATO15228 680 aa15.84■□□□□ 0.13
VPS13D-205ENST00000473099 COPRSQ9NQ92 184 aa15.84■□□□□ 0.13
VPS13D-205ENST00000473099 NARFQ9UHQ1 456 aa15.84■□□□□ 0.13
VPS13D-205ENST00000473099 QSER1Q2KHR3 1735 aa15.83■□□□□ 0.13
VPS13D-205ENST00000473099 FOXO4P98177 505 aa15.83■□□□□ 0.12
VPS13D-205ENST00000473099 G3BP1Q13283 466 aaKnown RBP eCLIP15.83■□□□□ 0.12
VPS13D-205ENST00000473099 OS9Q13438 667 aaPredicted RBP15.83■□□□□ 0.12
VPS13D-205ENST00000473099 DEFB132Q7Z7B7 95 aa15.83■□□□□ 0.12
VPS13D-205ENST00000473099 BACH2Q9BYV9 841 aa15.83■□□□□ 0.12
VPS13D-205ENST00000473099 ZPR1O75312 459 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 GPTP24298 496 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 BAG6P46379 1132 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 BMP2KLQ5H9B9 411 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 EPHA10Q5JZY3 1008 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 RHPN1Q8TCX5 695 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 OSBPL3Q9H4L5 887 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 TRMT112Q9UI30 125 aaKnown RBP15.82■□□□□ 0.12
VPS13D-205ENST00000473099 FBXO3Q9UK99 471 aa15.82■□□□□ 0.12
VPS13D-205ENST00000473099 APBB1O00213 710 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 KCNQ4P56696 695 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 AOX1Q06278 1338 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 LMBR1LQ6UX01 489 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 UBN2Q6ZU65 1347 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 PLEKHM2Q8IWE5 1019 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 SH3TC1Q8TE82 1336 aa15.81■□□□□ 0.12
VPS13D-205ENST00000473099 UTP14AQ9BVJ6 771 aaKnown RBP15.81■□□□□ 0.12
VPS13D-205ENST00000473099 SPEF2Q9C093 1822 aa15.8■□□□□ 0.12
VPS13D-205ENST00000473099 PDE8AO60658 829 aa15.8■□□□□ 0.12
VPS13D-205ENST00000473099 EIF5BO60841 1220 aaKnown RBP15.8■□□□□ 0.12
VPS13D-205ENST00000473099 SSFA2P28290 1259 aa15.8■□□□□ 0.12
VPS13D-205ENST00000473099 TRAPPC3LQ5T215 181 aa15.8■□□□□ 0.12
VPS13D-205ENST00000473099 CLASRPQ8N2M8 674 aaKnown RBP15.8■□□□□ 0.12
VPS13D-205ENST00000473099 LRRC4BQ9NT99 713 aa15.8■□□□□ 0.12
VPS13D-205ENST00000473099 NIP7Q9Y221 180 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS13D-205ENST00000473099 IRS4O14654 1257 aaPredicted RBP15.79■□□□□ 0.12
VPS13D-205ENST00000473099 SMARCA5O60264 1052 aaPredicted RBP15.79■□□□□ 0.12
VPS13D-205ENST00000473099 CSF1RP07333 972 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 RFC4P35249 363 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 RFX5P48382 616 aaPredicted RBP15.79■□□□□ 0.12
VPS13D-205ENST00000473099 TXNRD1Q16881 649 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 JARID2Q92833 1246 aaPredicted RBP15.79■□□□□ 0.12
VPS13D-205ENST00000473099 FAM89AQ96GI7 184 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 NYXQ9GZU5 481 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 CHMP3Q9Y3E7 222 aa15.79■□□□□ 0.12
VPS13D-205ENST00000473099 SALL3Q9BXA9 1300 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 USP42Q9H9J4 1324 aaKnown RBP15.78■□□□□ 0.12
VPS13D-205ENST00000473099 APBA3O96018 575 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 CTSWP56202 376 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 PTPN12Q05209 780 aaKnown RBP15.78■□□□□ 0.12
VPS13D-205ENST00000473099 CCDC57Q2TAC2 916 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 C8orf34Q49A92 452 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 RTL5Q5HYW3 569 aaPredicted RBP15.78■□□□□ 0.12
VPS13D-205ENST00000473099 STAP2Q9UGK3 403 aa15.78■□□□□ 0.12
VPS13D-205ENST00000473099 CIAO1O76071 339 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 NTSR2O95665 410 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 MX1P20591 662 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 PDE1AP54750 535 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 TTC22Q5TAA0 569 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 SUSD4Q5VX71 490 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 ARHGEF1Q92888 912 aaKnown RBP15.77■□□□□ 0.12
VPS13D-205ENST00000473099 GPATCH3Q96I76 525 aa15.77■□□□□ 0.12
VPS13D-205ENST00000473099 PA2G4Q9UQ80 394 aaKnown RBP15.77■□□□□ 0.12
VPS13D-205ENST00000473099 IFIT5Q13325 482 aaKnown RBP15.76■□□□□ 0.11
VPS13D-205ENST00000473099 USPL1Q5W0Q7 1092 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms