RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 GPTP24298 496 aa12.54□□□□□ -0.4
SF3A1-207ENST00000471342 SF3B2Q13435 895 aaKnown RBP12.54□□□□□ -0.4
SF3A1-207ENST00000471342 RABL6Q3YEC7 729 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-207ENST00000471342 SLC10A5Q5PT55 438 aa12.54□□□□□ -0.4
SF3A1-207ENST00000471342 ABCC12Q96J65 1359 aa12.54□□□□□ -0.4
SF3A1-207ENST00000471342 GRM8O00222 908 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 PCCAP05165 728 aaPredicted RBP12.53□□□□□ -0.4
SF3A1-207ENST00000471342 RFX5P48382 616 aaPredicted RBP12.53□□□□□ -0.4
SF3A1-207ENST00000471342 KIF6Q6ZMV9 814 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.53□□□□□ -0.4
SF3A1-207ENST00000471342 PLA2G12BQ9BX93 195 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 STK32BQ9NY57 414 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 NRXN2Q9P2S2 1712 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 CARMIL3Q8ND23 1372 aa12.53□□□□□ -0.4
SF3A1-207ENST00000471342 IGHDP01880 384 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 CSF1RP07333 972 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 RFC4P35249 363 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 MTX1Q13505 466 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 PIAS4Q8N2W9 510 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-207ENST00000471342 ZBTB38Q8NAP3 1195 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-207ENST00000471342 FAM89AQ96GI7 184 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 C1orf115Q9H7X2 142 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 DDX19BQ9UMR2 479 aa12.52□□□□□ -0.41
SF3A1-207ENST00000471342 KLRG2A4D1S0 409 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-207ENST00000471342 PTGER2P43116 358 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 POLA2Q14181 598 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 R3HDM1Q15032 1099 aaKnown RBP12.51□□□□□ -0.41
SF3A1-207ENST00000471342 CEP85Q6P2H3 762 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 SLC51AQ86UW1 340 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 ITPRIPQ8IWB1 547 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 FLAD1Q8NFF5 587 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 CWC25Q9NXE8 425 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-207ENST00000471342 NIP7Q9Y221 180 aaKnown RBP eCLIP12.51□□□□□ -0.41
SF3A1-207ENST00000471342 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-207ENST00000471342 CDHR2Q9BYE9 1310 aa12.51□□□□□ -0.41
SF3A1-207ENST00000471342 PNMA6EA0A0J9YXQ4 647 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 ERFEQ4G0M1 354 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 PARP10Q53GL7 1025 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 HSP90AB3PQ58FF7 597 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 PRR5LQ6MZQ0 368 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 NUTM1Q86Y26 1132 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 FTSJ3Q8IY81 847 aaKnown RBP12.5□□□□□ -0.41
SF3A1-207ENST00000471342 LRRFIP2Q9Y608 721 aaKnown RBP12.5□□□□□ -0.41
SF3A1-207ENST00000471342 ANKRD36CQ5JPF3 1778 aa12.5□□□□□ -0.41
SF3A1-207ENST00000471342 KDM2BQ8NHM5 1336 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 ZPR1O75312 459 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 MS4A1P11836 297 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 MSL1Q68DK7 614 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 UBE3BQ7Z3V4 1068 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 CCDC24Q8N4L8 307 aa12.49□□□□□ -0.41
SF3A1-207ENST00000471342 BICC1Q9H694 974 aaKnown RBP12.49□□□□□ -0.41
SF3A1-207ENST00000471342 RIC1Q4ADV7 1423 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 PSDA5PKW4 1024 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-207ENST00000471342 SERPINB2P05120 415 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 ATP8B2P98198 1209 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 BICDL1Q6ZP65 573 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 NLGN1Q8N2Q7 840 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 TTLL11Q8NHH1 800 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 SSH3Q8TE77 659 aa12.48□□□□□ -0.41
SF3A1-207ENST00000471342 UTP14AQ9BVJ6 771 aaKnown RBP12.48□□□□□ -0.41
SF3A1-207ENST00000471342 MMP10P09238 476 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 HCLS1P14317 486 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 HMGB2P26583 209 aaKnown RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 SF3B3Q15393 1217 aaKnown RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 RTL5Q5HYW3 569 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 ERICH6BQ5W0A0 696 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 ARXQ96QS3 562 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 DDX60Q8IY21 1712 aaKnown RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 TNRC6CQ9HCJ0 1690 aaKnown RBP12.47□□□□□ -0.41
SF3A1-207ENST00000471342 SRCAPQ6ZRS2 3230 aa12.47□□□□□ -0.41
SF3A1-207ENST00000471342 SH3TC1Q8TE82 1336 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 IRS4O14654 1257 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-207ENST00000471342 GNAI3P08754 354 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 PTPN12Q05209 780 aaKnown RBP12.46□□□□□ -0.41
SF3A1-207ENST00000471342 NEXNQ0ZGT2 675 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 HDAC1Q13547 482 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-207ENST00000471342 SETDB2Q96T68 719 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 TRMT112Q9UI30 125 aaKnown RBP12.46□□□□□ -0.41
SF3A1-207ENST00000471342 ZNF652Q9Y2D9 606 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 GTF3C3Q9Y5Q9 886 aa12.46□□□□□ -0.41
SF3A1-207ENST00000471342 ZBTB7AO95365 584 aa12.45□□□□□ -0.42
SF3A1-207ENST00000471342 GNAI2P04899 355 aa12.45□□□□□ -0.42
SF3A1-207ENST00000471342 KCNA3P22001 575 aa12.45□□□□□ -0.42
SF3A1-207ENST00000471342 PPP1R42Q7Z4L9 355 aa12.45□□□□□ -0.42
SF3A1-207ENST00000471342 RTL9Q8NET4 1388 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 FAM177BA6PVY3 158 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 PDE8AO60658 829 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 UBTFL1P0CB47 393 aaPredicted RBP12.44□□□□□ -0.42
SF3A1-207ENST00000471342 CTSWP56202 376 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 AAMPQ13685 434 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 LMBR1LQ6UX01 489 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 SEC31BQ9NQW1 1179 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 NOP58Q9Y2X3 529 aaKnown RBP12.44□□□□□ -0.42
SF3A1-207ENST00000471342 ANKRD31Q8N7Z5 1873 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 C10orf71Q711Q0 1435 aa12.44□□□□□ -0.42
SF3A1-207ENST00000471342 AFDNP55196 1824 aaKnown RBP12.44□□□□□ -0.42
SF3A1-207ENST00000471342 KIAA1551Q9HCM1 1747 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 MSH5O43196 834 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms