RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-208	ENST00000471250	PCCA	P05165	728 aa	Predicted RBP	32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	GSPT1	P15170	499 aa	Known RBP	32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	PDE1A	P54750	535 aa		32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	SEC24B	O95487	1268 aa		32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	OS9	Q13438	667 aa	Predicted RBP	32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	IL1RAPL2	Q9NP60	686 aa		32.02	■■■□□ 2.72
U2AF1-208	ENST00000471250	RFX5	P48382	616 aa	Predicted RBP	32.01	■■■□□ 2.71
U2AF1-208	ENST00000471250	NLRP10	Q86W26	655 aa		32.01	■■■□□ 2.71
U2AF1-208	ENST00000471250	KRT27	Q7Z3Y8	459 aa		32	■■■□□ 2.71
U2AF1-208	ENST00000471250	BCL11B	Q9C0K0	894 aa	Predicted RBP	32	■■■□□ 2.71
U2AF1-208	ENST00000471250	COPRS	Q9NQ92	184 aa		32	■■■□□ 2.71
U2AF1-208	ENST00000471250	RBM6	P78332	1123 aa	Known RBP	31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	G3BP1	Q13283	466 aa	Known RBP eCLIP	31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	LMBR1L	Q6UX01	489 aa		31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	STAP2	Q9UGK3	403 aa		31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	MX1	P20591	662 aa		31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	RTL5	Q5HYW3	569 aa	Predicted RBP	31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	RC3H1	Q5TC82	1133 aa	Known RBP	31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	ZNF34	Q8IZ26	560 aa		31.99	■■■□□ 2.71
U2AF1-208	ENST00000471250	CAMTA2	O94983	1202 aa		31.98	■■■□□ 2.71
U2AF1-208	ENST00000471250	FAM196A	Q6ZSG2	479 aa		31.98	■■■□□ 2.71
U2AF1-208	ENST00000471250	GPT	P24298	496 aa		31.97	■■■□□ 2.71
U2AF1-208	ENST00000471250	ANP32A	P39687	249 aa	Known RBP	31.97	■■■□□ 2.71
U2AF1-208	ENST00000471250	KCNQ4	P56696	695 aa		31.96	■■■□□ 2.71
U2AF1-208	ENST00000471250	PLA2G12B	Q9BX93	195 aa		31.96	■■■□□ 2.71
U2AF1-208	ENST00000471250	CCNL1	Q9UK58	526 aa	Predicted RBP	31.96	■■■□□ 2.71
U2AF1-208	ENST00000471250	AOX1	Q06278	1338 aa		31.96	■■■□□ 2.71
U2AF1-208	ENST00000471250	CDHR2	Q9BYE9	1310 aa		31.96	■■■□□ 2.71
U2AF1-208	ENST00000471250	PTPN12	Q05209	780 aa	Known RBP	31.95	■■■□□ 2.71
U2AF1-208	ENST00000471250	BCOR	Q6W2J9	1755 aa		31.94	■■■□□ 2.7
U2AF1-208	ENST00000471250	SASH1	O94885	1247 aa		31.94	■■■□□ 2.7
U2AF1-208	ENST00000471250	KLHDC4	Q8TBB5	520 aa		31.94	■■■□□ 2.7
U2AF1-208	ENST00000471250	FAM89A	Q96GI7	184 aa		31.94	■■■□□ 2.7
U2AF1-208	ENST00000471250	TAF1L	Q8IZX4	1826 aa		31.93	■■■□□ 2.7
U2AF1-208	ENST00000471250	NUTM1	Q86Y26	1132 aa		31.93	■■■□□ 2.7
U2AF1-208	ENST00000471250	CLASRP	Q8N2M8	674 aa	Known RBP	31.93	■■■□□ 2.7
U2AF1-208	ENST00000471250	UBN2	Q6ZU65	1347 aa		31.92	■■■□□ 2.7
U2AF1-208	ENST00000471250	TUBGCP6	Q96RT7	1819 aa		31.92	■■■□□ 2.7
U2AF1-208	ENST00000471250	SIL1	Q9H173	461 aa		31.92	■■■□□ 2.7
U2AF1-208	ENST00000471250	CDC45	O75419	566 aa		31.91	■■■□□ 2.7
U2AF1-208	ENST00000471250	RPS6KA4	O75676	772 aa		31.9	■■■□□ 2.7
U2AF1-208	ENST00000471250	SDS	P20132	328 aa		31.9	■■■□□ 2.7
U2AF1-208	ENST00000471250	CHMP3	Q9Y3E7	222 aa		31.9	■■■□□ 2.7
U2AF1-208	ENST00000471250	UPF2	Q9HAU5	1272 aa	Known RBP	31.89	■■■□□ 2.7
U2AF1-208	ENST00000471250	TRMT112	Q9UI30	125 aa	Known RBP	31.89	■■■□□ 2.7
U2AF1-208	ENST00000471250	USP42	Q9H9J4	1324 aa	Known RBP	31.88	■■■□□ 2.69
U2AF1-208	ENST00000471250	RGL2	O15211	777 aa		31.88	■■■□□ 2.69
U2AF1-208	ENST00000471250	CSF1R	P07333	972 aa		31.88	■■■□□ 2.69
U2AF1-208	ENST00000471250	TSHZ3	Q63HK5	1081 aa		31.88	■■■□□ 2.69
U2AF1-208	ENST00000471250	TBC1D9	Q6ZT07	1266 aa		31.88	■■■□□ 2.69
U2AF1-208	ENST00000471250	PARP10	Q53GL7	1025 aa		31.87	■■■□□ 2.69
U2AF1-208	ENST00000471250	CLEC4G	Q6UXB4	293 aa		31.87	■■■□□ 2.69
U2AF1-208	ENST00000471250	ZNF652	Q9Y2D9	606 aa		31.87	■■■□□ 2.69
U2AF1-208	ENST00000471250	SYNE4	Q8N205	404 aa		31.86	■■■□□ 2.69
U2AF1-208	ENST00000471250	SUSD4	Q5VX71	490 aa		31.85	■■■□□ 2.69
U2AF1-208	ENST00000471250	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	31.85	■■■□□ 2.69
U2AF1-208	ENST00000471250	TTC41P	Q6P2S7	1318 aa		31.85	■■■□□ 2.69
U2AF1-208	ENST00000471250	IRS4	O14654	1257 aa	Predicted RBP	31.84	■■■□□ 2.69
U2AF1-208	ENST00000471250	IFIT2	P09913	472 aa	Known RBP	31.84	■■■□□ 2.69
U2AF1-208	ENST00000471250	SCN7A	Q01118	1682 aa		31.84	■■■□□ 2.69
U2AF1-208	ENST00000471250	C4B	P0C0L5	1744 aa		31.84	■■■□□ 2.69
U2AF1-208	ENST00000471250	MYH3	P11055	1940 aa		31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	MFAP1	P55081	439 aa	Known RBP	31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	AACS	Q86V21	672 aa		31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	PI4K2B	Q8TCG2	481 aa		31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	GNPAT	O15228	680 aa		31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	EAF2	Q96CJ1	260 aa	Predicted RBP	31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	UTP14A	Q9BVJ6	771 aa	Known RBP	31.83	■■■□□ 2.69
U2AF1-208	ENST00000471250	RXRB	P28702	533 aa		31.82	■■■□□ 2.68
U2AF1-208	ENST00000471250	AK7	Q96M32	723 aa		31.82	■■■□□ 2.68
U2AF1-208	ENST00000471250	NIP7	Q9Y221	180 aa	Known RBP eCLIP	31.82	■■■□□ 2.68
U2AF1-208	ENST00000471250	PDE8A	O60658	829 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	TRIM37	O94972	964 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	CCDC57	Q2TAC2	916 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	FBXO41	Q8TF61	875 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	TBC1D32	Q96NH3	1257 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	NARF	Q9UHQ1	456 aa		31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	RTCB	Q9Y3I0	505 aa	Known RBP	31.81	■■■□□ 2.68
U2AF1-208	ENST00000471250	SH3TC1	Q8TE82	1336 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	EIF5B	O60841	1220 aa	Known RBP	31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	GPATCH3	Q96I76	525 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	IPO9	Q96P70	1041 aa	Known RBP	31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	CIAO1	O76071	339 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	CTSW	P56202	376 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	TFCP2	Q12800	502 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	ATG9A	Q7Z3C6	839 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	TTLL11	Q8NHH1	800 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	LRRC4B	Q9NT99	713 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	ECHDC1	Q9NTX5	307 aa		31.8	■■■□□ 2.68
U2AF1-208	ENST00000471250	EYA2	O00167	538 aa		31.79	■■■□□ 2.68
U2AF1-208	ENST00000471250	FBXO3	Q9UK99	471 aa		31.79	■■■□□ 2.68
U2AF1-208	ENST00000471250	ERC2	O15083	957 aa		31.78	■■■□□ 2.68
U2AF1-208	ENST00000471250	IL15	P40933	162 aa	Predicted RBP	31.78	■■■□□ 2.68
U2AF1-208	ENST00000471250	SLC27A3	Q5K4L6	730 aa		31.78	■■■□□ 2.68
U2AF1-208	ENST00000471250	ZNF594	Q96JF6	807 aa	Predicted RBP	31.78	■■■□□ 2.68
U2AF1-208	ENST00000471250	GLRX3	O76003	335 aa	Known RBP	31.77	■■■□□ 2.68
U2AF1-208	ENST00000471250	NTSR2	O95665	410 aa		31.77	■■■□□ 2.68
U2AF1-208	ENST00000471250	CASC1	Q6TDU7	716 aa		31.77	■■■□□ 2.68
U2AF1-208	ENST00000471250	CCDC8	Q9H0W5	538 aa	Predicted RBP	31.77	■■■□□ 2.68

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms