RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 CCNL1Q9UK58 526 aaPredicted RBP23.39■■□□□ 1.33
SMC4-209ENST00000468653 PCCAP05165 728 aaPredicted RBP23.38■■□□□ 1.33
SMC4-209ENST00000468653 ANP32AP39687 249 aaKnown RBP23.38■■□□□ 1.33
SMC4-209ENST00000468653 PDE1AP54750 535 aa23.38■■□□□ 1.33
SMC4-209ENST00000468653 FOXO4P98177 505 aa23.38■■□□□ 1.33
SMC4-209ENST00000468653 NLRP10Q86W26 655 aa23.38■■□□□ 1.33
SMC4-209ENST00000468653 CNTNAP4Q9C0A0 1308 aa23.38■■□□□ 1.33
SMC4-209ENST00000468653 MYH14Q7Z406 1995 aaKnown RBP23.38■■□□□ 1.33
SMC4-209ENST00000468653 ZBTB38Q8NAP3 1195 aaPredicted RBP23.37■■□□□ 1.33
SMC4-209ENST00000468653 OSBPL3Q9H4L5 887 aa23.37■■□□□ 1.33
SMC4-209ENST00000468653 CHMP3Q9Y3E7 222 aa23.37■■□□□ 1.33
SMC4-209ENST00000468653 COL5A3P25940 1745 aaPredicted RBP23.37■■□□□ 1.33
SMC4-209ENST00000468653 SBF2Q86WG5 1849 aa23.37■■□□□ 1.33
SMC4-209ENST00000468653 GSPT1P15170 499 aaKnown RBP23.37■■□□□ 1.33
SMC4-209ENST00000468653 MX1P20591 662 aa23.37■■□□□ 1.33
SMC4-209ENST00000468653 SEC24BO95487 1268 aa23.36■■□□□ 1.33
SMC4-209ENST00000468653 FAM89AQ96GI7 184 aa23.36■■□□□ 1.33
SMC4-209ENST00000468653 SIL1Q9H173 461 aa23.36■■□□□ 1.33
SMC4-209ENST00000468653 SALL3Q9BXA9 1300 aa23.36■■□□□ 1.33
SMC4-209ENST00000468653 CAMTA2O94983 1202 aa23.35■■□□□ 1.33
SMC4-209ENST00000468653 KLHDC4Q8TBB5 520 aa23.35■■□□□ 1.33
SMC4-209ENST00000468653 RFX5P48382 616 aaPredicted RBP23.35■■□□□ 1.33
SMC4-209ENST00000468653 RC3H1Q5TC82 1133 aaKnown RBP23.35■■□□□ 1.33
SMC4-209ENST00000468653 NUTM1Q86Y26 1132 aa23.35■■□□□ 1.33
SMC4-209ENST00000468653 CLASRPQ8N2M8 674 aaKnown RBP23.35■■□□□ 1.33
SMC4-209ENST00000468653 UPF2Q9HAU5 1272 aaKnown RBP23.35■■□□□ 1.33
SMC4-209ENST00000468653 COPRSQ9NQ92 184 aa23.35■■□□□ 1.33
SMC4-209ENST00000468653 NUP98P52948 1817 aa23.34■■□□□ 1.33
SMC4-209ENST00000468653 ZNF34Q8IZ26 560 aa23.34■■□□□ 1.33
SMC4-209ENST00000468653 PTPN12Q05209 780 aaKnown RBP23.33■■□□□ 1.33
SMC4-209ENST00000468653 STAP2Q9UGK3 403 aa23.33■■□□□ 1.33
SMC4-209ENST00000468653 TRMT112Q9UI30 125 aaKnown RBP23.33■■□□□ 1.33
SMC4-209ENST00000468653 ANKRD36CQ5JPF3 1778 aa23.33■■□□□ 1.32
SMC4-209ENST00000468653 CDHR2Q9BYE9 1310 aa23.32■■□□□ 1.32
SMC4-209ENST00000468653 BRWD3Q6RI45 1802 aa23.32■■□□□ 1.32
SMC4-209ENST00000468653 PLA2G12BQ9BX93 195 aa23.32■■□□□ 1.32
SMC4-209ENST00000468653 ZNF652Q9Y2D9 606 aa23.32■■□□□ 1.32
SMC4-209ENST00000468653 CDC45O75419 566 aa23.31■■□□□ 1.32
SMC4-209ENST00000468653 SASH1O94885 1247 aa23.31■■□□□ 1.32
SMC4-209ENST00000468653 TSHZ3Q63HK5 1081 aa23.31■■□□□ 1.32
SMC4-209ENST00000468653 AOX1Q06278 1338 aa23.31■■□□□ 1.32
SMC4-209ENST00000468653 UBN2Q6ZU65 1347 aa23.31■■□□□ 1.32
SMC4-209ENST00000468653 RPS6KA4O75676 772 aa23.3■■□□□ 1.32
SMC4-209ENST00000468653 SDSP20132 328 aa23.3■■□□□ 1.32
SMC4-209ENST00000468653 GNPATO15228 680 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 TRIM37O94972 964 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 PARP10Q53GL7 1025 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 LY75O60449 1722 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 IFIT2P09913 472 aaKnown RBP23.29■■□□□ 1.32
SMC4-209ENST00000468653 RXRBP28702 533 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 SYNE4Q8N205 404 aa23.29■■□□□ 1.32
SMC4-209ENST00000468653 IRS4O14654 1257 aaPredicted RBP23.28■■□□□ 1.32
SMC4-209ENST00000468653 MFAP1P55081 439 aaKnown RBP23.28■■□□□ 1.32
SMC4-209ENST00000468653 CLEC4GQ6UXB4 293 aa23.28■■□□□ 1.32
SMC4-209ENST00000468653 TBC1D9Q6ZT07 1266 aa23.28■■□□□ 1.32
SMC4-209ENST00000468653 AACSQ86V21 672 aa23.28■■□□□ 1.32
SMC4-209ENST00000468653 NIP7Q9Y221 180 aaKnown RBP eCLIP23.28■■□□□ 1.321e-7■■■■■ 83.2
SMC4-209ENST00000468653 CCDC57Q2TAC2 916 aa23.27■■□□□ 1.32
SMC4-209ENST00000468653 FBXO41Q8TF61 875 aa23.27■■□□□ 1.32
SMC4-209ENST00000468653 RTCBQ9Y3I0 505 aaKnown RBP23.27■■□□□ 1.32
SMC4-209ENST00000468653 SUSD4Q5VX71 490 aa23.27■■□□□ 1.32
SMC4-209ENST00000468653 GPATCH3Q96I76 525 aa23.27■■□□□ 1.32
SMC4-209ENST00000468653 UTP14AQ9BVJ6 771 aaKnown RBP23.27■■□□□ 1.32
SMC4-209ENST00000468653 CSF1RP07333 972 aa23.26■■□□□ 1.31
SMC4-209ENST00000468653 FAM177BA6PVY3 158 aa23.25■■□□□ 1.31
SMC4-209ENST00000468653 TTC41PQ6P2S7 1318 aa23.25■■□□□ 1.31
SMC4-209ENST00000468653 SH3TC1Q8TE82 1336 aa23.25■■□□□ 1.31
SMC4-209ENST00000468653 PDE8AO60658 829 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 CASC1Q6TDU7 716 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 SMIM5Q71RC9 77 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 CCDC85AQ96PX6 553 aaPredicted RBP23.24■■□□□ 1.31
SMC4-209ENST00000468653 USP42Q9H9J4 1324 aaKnown RBP23.24■■□□□ 1.31
SMC4-209ENST00000468653 TRIM6-TRIM34B2RNG4 842 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 RGL2O15211 777 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 CTSWP56202 376 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 TFCP2Q12800 502 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 EAF2Q96CJ1 260 aaPredicted RBP23.24■■□□□ 1.31
SMC4-209ENST00000468653 AK7Q96M32 723 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 NARFQ9UHQ1 456 aa23.24■■□□□ 1.31
SMC4-209ENST00000468653 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.24■■□□□ 1.31
SMC4-209ENST00000468653 ERC2O15083 957 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 ZPR1O75312 459 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 IFIT5Q13325 482 aaKnown RBP23.23■■□□□ 1.31
SMC4-209ENST00000468653 TAF7LQ5H9L4 462 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 SLC27A3Q5K4L6 730 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 PI4K2BQ8TCG2 481 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 ZNF594Q96JF6 807 aaPredicted RBP23.23■■□□□ 1.31
SMC4-209ENST00000468653 LRRC4BQ9NT99 713 aa23.23■■□□□ 1.31
SMC4-209ENST00000468653 BCORQ6W2J9 1755 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 EYA2O00167 538 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 EIF5BO60841 1220 aaKnown RBP23.22■■□□□ 1.31
SMC4-209ENST00000468653 TTLL11Q8NHH1 800 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 RILPL2Q969X0 211 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 CCDC8Q9H0W5 538 aaPredicted RBP23.22■■□□□ 1.31
SMC4-209ENST00000468653 ECHDC1Q9NTX5 307 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 TAF1LQ8IZX4 1826 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 GLRX3O76003 335 aaKnown RBP23.22■■□□□ 1.31
SMC4-209ENST00000468653 IL15P40933 162 aaPredicted RBP23.22■■□□□ 1.31
SMC4-209ENST00000468653 USPL1Q5W0Q7 1092 aa23.22■■□□□ 1.31
SMC4-209ENST00000468653 CIAO1O76071 339 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms