RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 GBP3Q9H0R5 595 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 KDM6BO15054 1643 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 YTHDC2Q9H6S0 1430 aaKnown RBP10.07□□□□□ -0.8
HPS4-209ENST00000466781 FAM83GA6ND36 823 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 GPTP24298 496 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 LUZP1Q86V48 1076 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 ABCA8O94911 1581 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 IFFO1Q0D2I5 559 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 FILIP1Q7Z7B0 1213 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 C16orf71Q8IYS4 520 aaPredicted RBP10.06□□□□□ -0.8
HPS4-209ENST00000466781 PPM1EQ8WY54 764 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 TSNARE1Q96NA8 513 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 SAMM50Q9Y512 469 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 PRPF40BQ6NWY9 871 aaKnown RBP10.06□□□□□ -0.8
HPS4-209ENST00000466781 CCDC83Q8IWF9 413 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 PLCD3Q8N3E9 789 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 C8orf76Q96K31 380 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 BOLA2Q9H3K6 86 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 PARP3Q9Y6F1 533 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 JARID2Q92833 1246 aaPredicted RBP10.06□□□□□ -0.8
HPS4-209ENST00000466781 CDC5LQ99459 802 aaKnown RBP10.06□□□□□ -0.8
HPS4-209ENST00000466781 LDHCP07864 332 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 MRPS9P82933 396 aaKnown RBP10.06□□□□□ -0.8
HPS4-209ENST00000466781 CRACR2AQ9BSW2 395 aa10.06□□□□□ -0.8
HPS4-209ENST00000466781 KIF5CO60282 957 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 BAG3O95817 575 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 SNRPA1P09661 255 aaKnown RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 CAMK4Q16566 473 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 MAP9Q49MG5 647 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 NBPF6Q5VWK0 638 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 NBPF5PQ86XG9 351 aaPredicted RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 SYCP3Q8IZU3 236 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 VTI1AQ96AJ9 217 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 LRRC45Q96CN5 670 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 BICD1Q96G01 975 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 NBPF4Q96M43 638 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 CEP63Q96MT8 703 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 ZSCAN12O43309 604 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 USO1O60763 962 aaKnown RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 MX1P20591 662 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 MCM3P25205 808 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 USP8P40818 1118 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 AMPD3Q01432 767 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 TDRD12Q587J7 1177 aaKnown RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 SPTY2D1Q68D10 685 aaPredicted RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 CDCA7Q9BWT1 371 aaPredicted RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 IFIT3O14879 490 aaKnown RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 TTF1Q15361 905 aaPredicted RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 TFCP2L1Q9NZI6 479 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 PUF60Q9UHX1 559 aaKnown RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 PTPRKQ15262 1439 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 TNNT1P13805 278 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 KIF5BP33176 963 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 TAOK3Q9H2K8 898 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 ZBTB3Q9H5J0 574 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 KAT14Q9H8E8 782 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 STK32BQ9NY57 414 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 RALGAPBQ86X10 1494 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 FERP16591 822 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 LMAN1P49257 510 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 GSTO1P78417 241 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 MPNDQ8N594 471 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 ANO10Q9NW15 660 aa10.05□□□□□ -0.8
HPS4-209ENST00000466781 DBF4Q9UBU7 674 aaPredicted RBP10.05□□□□□ -0.8
HPS4-209ENST00000466781 SETDB2Q96T68 719 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 NUP88Q99567 741 aaPredicted RBP10.04□□□□□ -0.8
HPS4-209ENST00000466781 WDR70Q9NW82 654 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 KDM5DQ9BY66 1539 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 PDE4BQ07343 736 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 SLFN5Q08AF3 891 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 UBE4AQ14139 1066 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 USP21Q9UK80 565 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 EXOC6BQ9Y2D4 811 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 SHTN1A0MZ66 631 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 MAP3K9P80192 1104 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 RBM10P98175 930 aaKnown RBP10.04□□□□□ -0.8
HPS4-209ENST00000466781 GRM1Q13255 1194 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 ZRANB1Q9UGI0 708 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 PCDH11XQ9BZA7 1347 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 PCDH11YQ9BZA8 1340 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 CCDC40Q4G0X9 1142 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 ZNF354CQ86Y25 554 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 CWC25Q9NXE8 425 aaPredicted RBP10.04□□□□□ -0.8
HPS4-209ENST00000466781 HDAC9Q9UKV0 1011 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 CLEC11AQ9Y240 323 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 PRAG1Q86YV5 1406 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 PRC1O43663 620 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 SMC1AQ14683 1233 aaKnown RBP10.04□□□□□ -0.8
HPS4-209ENST00000466781 HECW2Q9P2P5 1572 aa10.04□□□□□ -0.8
HPS4-209ENST00000466781 YEATS4O95619 227 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 SLC4A8Q2Y0W8 1093 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 AKAP4Q5JQC9 854 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 YEATS2Q9ULM3 1422 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 TRMT1LQ7Z2T5 733 aaKnown RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 CCDC82Q8N4S0 544 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 UTP14AQ9BVJ6 771 aaKnown RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 TOP1P11387 765 aaKnown RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 PRKCSHP14314 528 aaPredicted RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 MTIF2P46199 727 aaKnown RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 DNA2P51530 1060 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms