RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 ZKSCAN5Q9Y2L8 839 aa23.21■■□□□ 1.31
LIMS2-212ENST00000466410 TRPM3Q9HCF6 1732 aaPredicted RBP23.21■■□□□ 1.31
LIMS2-212ENST00000466410 ZKSCAN1P17029 563 aaPredicted RBP23.21■■□□□ 1.31
LIMS2-212ENST00000466410 MAP4K1Q92918 833 aa23.21■■□□□ 1.31
LIMS2-212ENST00000466410 FIBPO43427 364 aa23.2■■□□□ 1.3
LIMS2-212ENST00000466410 ZNF500O60304 480 aaPredicted RBP23.2■■□□□ 1.3
LIMS2-212ENST00000466410 KCNJ4P48050 445 aa23.2■■□□□ 1.3
LIMS2-212ENST00000466410 ME3Q16798 604 aa23.2■■□□□ 1.3
LIMS2-212ENST00000466410 LARP1Q6PKG0 1096 aaKnown RBP23.2■■□□□ 1.3
LIMS2-212ENST00000466410 ZSCAN31Q96LW9 406 aaPredicted RBP23.2■■□□□ 1.3
LIMS2-212ENST00000466410 NEURL1BA8MQ27 555 aa23.2■■□□□ 1.3
LIMS2-212ENST00000466410 SH2B1Q9NRF2 756 aaPredicted RBP23.2■■□□□ 1.3
LIMS2-212ENST00000466410 MTMR6Q9Y217 621 aa23.2■■□□□ 1.3
LIMS2-212ENST00000466410 A0A0D9SFI3 127 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 UBE2HP62256 183 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 EPHA10Q5JZY3 1008 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 CCDC183Q5T5S1 534 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 NECAB1Q8N987 351 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 NFATC2IPQ8NCF5 419 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 XAGE3Q8WTP9 111 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 SLC52A2Q9HAB3 445 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 RAPGEF4Q8WZA2 1011 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 CCDC39Q9UFE4 941 aa23.19■■□□□ 1.3
LIMS2-212ENST00000466410 KDM6AO15550 1401 aaPredicted RBP23.18■■□□□ 1.3
LIMS2-212ENST00000466410 HIP1O00291 1037 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 COPS6Q7L5N1 327 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 ATP6V1DQ9Y5K8 247 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 NPHP3Q7Z494 1330 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 C5P01031 1676 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 GCKRQ14397 625 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 NLRP2Q9NX02 1062 aa23.18■■□□□ 1.3
LIMS2-212ENST00000466410 SLC27A2O14975 620 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 NEXNQ0ZGT2 675 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.17■■□□□ 1.3
LIMS2-212ENST00000466410 MYD88Q99836 296 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 FSD1Q9BTV5 496 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 TPCN1Q9ULQ1 816 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 STRCP1A6NGW2 1772 aa23.17■■□□□ 1.3
LIMS2-212ENST00000466410 DNM1Q05193 864 aaKnown RBP23.17■■□□□ 1.3
LIMS2-212ENST00000466410 LMTK3Q96Q04 1460 aa23.16■■□□□ 1.3
LIMS2-212ENST00000466410 SNRKQ9NRH2 765 aa23.16■■□□□ 1.3
LIMS2-212ENST00000466410 TPM2P07951 284 aa23.16■■□□□ 1.3
LIMS2-212ENST00000466410 JARID2Q92833 1246 aaPredicted RBP23.16■■□□□ 1.3
LIMS2-212ENST00000466410 ZNF496Q96IT1 587 aaPredicted RBP23.16■■□□□ 1.3
LIMS2-212ENST00000466410 TAF6LQ9Y6J9 622 aa23.16■■□□□ 1.3
LIMS2-212ENST00000466410 PIP4K2AP48426 406 aaPredicted RBP23.15■■□□□ 1.3
LIMS2-212ENST00000466410 METTL22Q9BUU2 404 aaPredicted RBP23.15■■□□□ 1.3
LIMS2-212ENST00000466410 C1orf167Q5SNV9 1468 aa23.15■■□□□ 1.3
LIMS2-212ENST00000466410 VPS37CA5D8V6 355 aaPredicted RBP23.15■■□□□ 1.3
LIMS2-212ENST00000466410 PHKG2P15735 406 aa23.15■■□□□ 1.3
LIMS2-212ENST00000466410 SCN11AQ9UI33 1791 aa23.14■■□□□ 1.3
LIMS2-212ENST00000466410 EDC3Q96F86 508 aaKnown RBP23.14■■□□□ 1.3
LIMS2-212ENST00000466410 TCEANC2Q96MN5 208 aa23.14■■□□□ 1.3
LIMS2-212ENST00000466410 MCM5P33992 734 aa23.14■■□□□ 1.29
LIMS2-212ENST00000466410 ZNF589Q86UQ0 364 aaPredicted RBP23.13■■□□□ 1.29
LIMS2-212ENST00000466410 FAM184AQ8NB25 1140 aa23.13■■□□□ 1.29
LIMS2-212ENST00000466410 USP16Q9Y5T5 823 aa23.13■■□□□ 1.29
LIMS2-212ENST00000466410 PSMA5P28066 241 aa23.13■■□□□ 1.29
LIMS2-212ENST00000466410 MED23Q9ULK4 1368 aa23.13■■□□□ 1.29
LIMS2-212ENST00000466410 TATP17735 454 aaPredicted RBP23.12■■□□□ 1.29
LIMS2-212ENST00000466410 ANKRD13DQ6ZTN6 518 aa23.12■■□□□ 1.29
LIMS2-212ENST00000466410 LRP10Q7Z4F1 713 aa23.12■■□□□ 1.29
LIMS2-212ENST00000466410 C19orf44Q9H6X5 657 aa23.12■■□□□ 1.29
LIMS2-212ENST00000466410 PTMAP06454 111 aaKnown RBP23.12■■□□□ 1.29
LIMS2-212ENST00000466410 HCLS1P14317 486 aaPredicted RBP23.12■■□□□ 1.29
LIMS2-212ENST00000466410 LETM1O95202 739 aaPredicted RBP23.11■■□□□ 1.29
LIMS2-212ENST00000466410 DDX17Q92841 729 aaKnown RBP23.11■■□□□ 1.29
LIMS2-212ENST00000466410 HSPA2P54652 639 aa23.11■■□□□ 1.29
LIMS2-212ENST00000466410 UVSSAQ2YD98 709 aa23.11■■□□□ 1.29
LIMS2-212ENST00000466410 BLOC1S2Q6QNY1 142 aa23.11■■□□□ 1.29
LIMS2-212ENST00000466410 USP25Q9UHP3 1055 aa23.11■■□□□ 1.29
LIMS2-212ENST00000466410 MEGF6O75095 1541 aa23.11■■□□□ 1.29
LIMS2-212ENST00000466410 MRC1P22897 1456 aa23.1■■□□□ 1.29
LIMS2-212ENST00000466410 LARP1BQ659C4 914 aaKnown RBP23.1■■□□□ 1.29
LIMS2-212ENST00000466410 R3HCC1Q9Y3T6 440 aaKnown RBP23.1■■□□□ 1.29
LIMS2-212ENST00000466410 TMEM94Q12767 1356 aa23.1■■□□□ 1.29
LIMS2-212ENST00000466410 RNF20Q5VTR2 975 aa23.1■■□□□ 1.29
LIMS2-212ENST00000466410 COPRSQ9NQ92 184 aa23.1■■□□□ 1.29
LIMS2-212ENST00000466410 DBNLQ9UJU6 430 aaKnown RBP23.1■■□□□ 1.29
LIMS2-212ENST00000466410 RFX5P48382 616 aaPredicted RBP23.09■■□□□ 1.29
LIMS2-212ENST00000466410 GIMAP6Q6P9H5 292 aa23.09■■□□□ 1.29
LIMS2-212ENST00000466410 RPS6KB1P23443 525 aa23.09■■□□□ 1.29
LIMS2-212ENST00000466410 PTPN12Q05209 780 aaKnown RBP23.09■■□□□ 1.29
LIMS2-212ENST00000466410 CSPP1Q1MSJ5 1256 aa23.09■■□□□ 1.29
LIMS2-212ENST00000466410 IFNL2Q8IZJ0 200 aa23.09■■□□□ 1.29
LIMS2-212ENST00000466410 SNRPA1P09661 255 aaKnown RBP23.08■■□□□ 1.29
LIMS2-212ENST00000466410 TFCP2Q12800 502 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 HSP90AA2PQ14568 343 aaPredicted RBP23.08■■□□□ 1.29
LIMS2-212ENST00000466410 CDC37L1Q7L3B6 337 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 UBE3BQ7Z3V4 1068 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 MPNDQ8N594 471 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 NDUFB9Q9Y6M9 179 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 ALS2Q96Q42 1657 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 TAF5LO75529 589 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 TOB2Q14106 344 aaPredicted RBP23.08■■□□□ 1.29
LIMS2-212ENST00000466410 FERMT3Q86UX7 667 aa23.08■■□□□ 1.29
LIMS2-212ENST00000466410 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.08■■□□□ 1.29
LIMS2-212ENST00000466410 KIF1AQ12756 1690 aa23.07■■□□□ 1.28
LIMS2-212ENST00000466410 TNNI3KQ59H18 835 aa23.07■■□□□ 1.28
LIMS2-212ENST00000466410 FUCA2Q9BTY2 467 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms