RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 NUTM2DQ5VT03 806 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 HOXA7P31268 230 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 TTF1Q15361 905 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 TYRO3Q06418 890 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 SF3B2Q13435 895 aaKnown RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 SLFNL1Q499Z3 407 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 ZNF530Q6P9A1 599 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 FCHSD1Q86WN1 690 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 DNAJC2Q99543 621 aaKnown RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 PPP2R5BQ15173 497 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 CEP135Q66GS9 1140 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 EMILIN1Q9Y6C2 1016 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 PLEKHG2Q9H7P9 1386 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 ARHGEF28Q8N1W1 1705 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 CWC27Q6UX04 472 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 SERPINC1P01008 464 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 WAPLQ7Z5K2 1190 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 KCNJ6P48051 423 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 FAM160A1Q05DH4 1040 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 SSH3Q8TE77 659 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 HCLS1P14317 486 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 FBXO3Q9UK99 471 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 KIF5CO60282 957 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 EIF2S2P20042 333 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 SNW1Q13573 536 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 PPP1R42Q7Z4L9 355 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 MRPS27Q92552 414 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 NLRP1Q9C000 1473 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 RUFY3Q7L099 469 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 CCAR1Q8IX12 1150 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 ABTB2Q8N961 1025 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 PRPF40BQ6NWY9 871 aaKnown RBP8.17□□□□□ -1.1
SYNE1-216ENST00000461872 CLSTN2Q9H4D0 955 aa8.17□□□□□ -1.1
SYNE1-216ENST00000461872 ANKARQ7Z5J8 1434 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 GIGYF1O75420 1035 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 SYT1P21579 422 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 TMTC2Q8N394 836 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 RNF41Q9H4P4 317 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 GOLIM4O00461 696 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 PPP4R3BQ5MIZ7 849 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 ALDH8A1Q9H2A2 487 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 CHMP3Q9Y3E7 222 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 CSB-PGBD3P0DP91 1061 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 GTF2F1P35269 517 aaKnown RBP eCLIP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 NAA15Q9BXJ9 866 aaKnown RBP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 ERBB4Q15303 1308 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 BTBD11A6QL63 1104 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 KSR2Q6VAB6 950 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 DDIT3P35638 169 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 RPGRIP1Q96KN7 1286 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 ITSN1Q15811 1721 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 NME9Q86XW9 330 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 MPHOSPH8Q99549 860 aa8.16□□□□□ -1.1
SYNE1-216ENST00000461872 TEX13AQ9BXU3 409 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-216ENST00000461872 TATP17735 454 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-216ENST00000461872 PPP1R2P41236 205 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 HSP90AB3PQ58FF7 597 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 POLR3GO15318 223 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-216ENST00000461872 CEP112Q8N8E3 955 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 AGLP35573 1532 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 TXNDC2Q86VQ3 553 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 RASSF8Q8NHQ8 419 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 C8orf76Q96K31 380 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 MEIS3Q99687 375 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 GNL3LQ9NVN8 582 aaKnown RBP8.15□□□□□ -1.1
SYNE1-216ENST00000461872 CLTCQ00610 1675 aaKnown RBP8.15□□□□□ -1.1
SYNE1-216ENST00000461872 CCDC148Q8NFR7 591 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 CTCFLQ8NI51 663 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-216ENST00000461872 MROH1Q8NDA8 1641 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 C8orf58Q8NAV2 365 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 NEK1Q96PY6 1258 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 ARFGAP3Q9NP61 516 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 SPTLC3Q9NUV7 552 aa8.15□□□□□ -1.1
SYNE1-216ENST00000461872 TOP1P11387 765 aaKnown RBP8.15□□□□□ -1.11
SYNE1-216ENST00000461872 ARHGAP29Q52LW3 1261 aa8.15□□□□□ -1.11
SYNE1-216ENST00000461872 RBSNQ9H1K0 784 aa8.15□□□□□ -1.11
SYNE1-216ENST00000461872 SOX12O15370 315 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 SKILP12757 684 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 PIP4K2BP78356 416 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 FAM69CQ0P6D2 419 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 EIF4A2Q14240 407 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 NFXL1Q6ZNB6 911 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 CEP126Q9P2H0 1117 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 KIDINS220Q9ULH0 1771 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 TRIM14Q14142 442 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 FGFR1OPO95684 399 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 TULP4Q9NRJ4 1543 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 RBM10P98175 930 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 CYP2E1P05181 493 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 MLECQ14165 292 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 A0A1W2PQ27 194 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 A0A1W2PQ64 194 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 A0A1W2PQD8 194 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 CKAP4Q07065 602 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 MCM10Q7L590 875 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 SPC24Q8NBT2 197 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 TDRD7Q8NHU6 1098 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 CNNM2Q9H8M5 875 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 HELLSQ9NRZ9 838 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms