RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 KIF6Q6ZMV9 814 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 G2E3Q7L622 706 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 MAP3K2Q9Y2U5 619 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 NWD1Q149M9 1564 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 EXOC5O00471 708 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 STARD3NLO95772 234 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 TMCO3Q6UWJ1 677 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 FILIP1Q7Z7B0 1213 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 NFATC2IPQ8NCF5 419 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 CDCA7Q9BWT1 371 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-202ENST00000460333 IPO7O95373 1038 aaKnown RBP7.3□□□□□ -1.24
VPS13D-202ENST00000460333 CREBRFQ8IUR6 639 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 KRT222Q8N1A0 295 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 ANO2Q9NQ90 1003 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 PAXBP1Q9Y5B6 917 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 PIK3C2AO00443 1686 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 NALCNQ8IZF0 1738 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 WDR17Q8IZU2 1322 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 ERICH4A6NGS2 130 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 ERVV-2B6SEH9 535 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 CNTROBQ8N137 903 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 TXLNBQ8N3L3 684 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 ANKRD20A12PQ8NF67 263 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 LINS1Q8NG48 757 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 C8orf37Q96NL8 207 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 VPS37CA5D8V6 355 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-202ENST00000460333 CARD10Q9BWT7 1032 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 PLEKHG2Q9H7P9 1386 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 KIAA0754O94854 1291 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 CCDC183Q5T5S1 534 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 CCDC191Q8NCU4 936 aa7.3□□□□□ -1.24
VPS13D-202ENST00000460333 OVOS2A0A0G2JMS6 1433 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 GIGYF1O75420 1035 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 BMS1Q14692 1282 aaKnown RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 HIP1O00291 1037 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 RBM42Q9BTD8 480 aaKnown RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 GBP3Q9H0R5 595 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 EXOC6BQ9Y2D4 811 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 SYCE3A1L190 88 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 MX1P20591 662 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 LRRFIP1Q32MZ4 808 aaKnown RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 GORABQ5T7V8 394 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 ANKRD13DQ6ZTN6 518 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 SPC24Q8NBT2 197 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 NOL10Q9BSC4 688 aaKnown RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 AXIN2Q9Y2T1 843 aa7.29□□□□□ -1.24
VPS13D-202ENST00000460333 RGPD8O14715 1765 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-202ENST00000460333 SLC39A6Q13433 755 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 TTC22Q5TAA0 569 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 ERBB4Q15303 1308 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 CPDO75976 1380 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 NEK4P51957 841 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 KIF18AQ8NI77 898 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 SNX21Q969T3 373 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 PHAXQ9H814 394 aaKnown RBP7.28□□□□□ -1.24
VPS13D-202ENST00000460333 OGFRQ9NZT2 677 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 CEMIPQ8WUJ3 1361 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 PPP1R42Q7Z4L9 355 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 GIMAP7Q8NHV1 300 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 UBXN4Q92575 508 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 MYD88Q99836 296 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 BCL11BQ9C0K0 894 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-202ENST00000460333 PSMA5P28066 241 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 GABPB1Q06547 395 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-202ENST00000460333 LRSAM1Q6UWE0 723 aa7.28□□□□□ -1.24
VPS13D-202ENST00000460333 GRM8O00222 908 aa7.27□□□□□ -1.24
VPS13D-202ENST00000460333 PTPN14Q15678 1187 aa7.27□□□□□ -1.24
VPS13D-202ENST00000460333 HSP90AB3PQ58FF7 597 aa7.27□□□□□ -1.24
VPS13D-202ENST00000460333 UTP14CQ5TAP6 766 aaKnown RBP7.27□□□□□ -1.24
VPS13D-202ENST00000460333 PANK2Q9BZ23 570 aa7.27□□□□□ -1.24
VPS13D-202ENST00000460333 BTG4Q9NY30 223 aa7.27□□□□□ -1.24
VPS13D-202ENST00000460333 XAGE3Q8WTP9 111 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 SOS2Q07890 1332 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 CBFA2T2O43439 604 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 PTCD1O75127 700 aaKnown RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 OLFM4Q6UX06 510 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 COPS6Q7L5N1 327 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 TNMDQ9H2S6 317 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 SLIT3O75094 1523 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 KDM4FA0A1W2PPD8 638 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 KINO60870 393 aaKnown RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 GLRX3O76003 335 aaKnown RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 BAG4O95429 457 aaKnown RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 ANXA1P04083 346 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 GTF2A1P52655 376 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 DDX11Q96FC9 970 aa7.27□□□□□ -1.25
VPS13D-202ENST00000460333 NOL7Q9UMY1 257 aaKnown RBP7.27□□□□□ -1.25
VPS13D-202ENST00000460333 SMARCA5O60264 1052 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-202ENST00000460333 KRT85P78386 507 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 ZSCAN23Q3MJ62 389 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 PEAK1Q9H792 1746 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 NFAT5O94916 1531 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 TUBB4AP04350 444 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 PLEKHM2Q8IWE5 1019 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 POTEB2H3BUK9 544 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 IVLP07476 585 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 TNNT1P13805 278 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 NOLC1Q14978 699 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS13D-202ENST00000460333 NUP62CLQ9H1M0 184 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 AOX1Q06278 1338 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms