RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CCDC85AQ96PX6 553 aaPredicted RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 IGSF1Q8N6C5 1336 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 TMEM2Q9UHN6 1383 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 USP6P35125 1406 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 TPM3P06753 285 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 PI4K2BQ8TCG2 481 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 SCAND2PQ9GZW5 306 aaPredicted RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 NRDCO43847 1150 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 KINO60870 393 aaKnown RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 PROSER3Q2NL68 480 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 BEND3Q5T5X7 828 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 LARP1Q6PKG0 1096 aaKnown RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 MTMR6Q9Y217 621 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 PRAMEF22A3QJZ6 481 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 ZNF165P49910 485 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 TYRO3Q06418 890 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 PPP4R3BQ5MIZ7 849 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 PDCL2Q8N4E4 241 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 DIP2CQ9Y2E4 1556 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 UBE3BQ7Z3V4 1068 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 DNAJC25Q9H1X3 360 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 HYPKQ9NX55 129 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 ZHX1Q9UKY1 873 aaPredicted RBP14.03□□□□□ -0.16
MSH6-204ENST00000445503 TTC41PQ6P2S7 1318 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 CRB1P82279 1406 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 BRF1Q92994 677 aa14.03□□□□□ -0.16
MSH6-204ENST00000445503 LIG1P18858 919 aa14.02□□□□□ -0.16
MSH6-204ENST00000445503 CCDC129Q6ZRS4 1044 aa14.02□□□□□ -0.16
MSH6-204ENST00000445503 SIRT1Q96EB6 747 aa14.02□□□□□ -0.16
MSH6-204ENST00000445503 CPLX1O14810 134 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 PIBF1Q8WXW3 757 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 SUCLG2Q96I99 432 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 TPCN1Q9ULQ1 816 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 IFT172Q9UG01 1749 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 AOX1Q06278 1338 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 COPS6Q7L5N1 327 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 FAM200AQ8TCP9 573 aa14.02□□□□□ -0.17
MSH6-204ENST00000445503 SLC27A2O14975 620 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 RAB11FIP4Q86YS3 637 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 XAGE3Q8WTP9 111 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 EAF2Q96CJ1 260 aaPredicted RBP14.01□□□□□ -0.17
MSH6-204ENST00000445503 CLIP2Q9UDT6 1046 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 PDE4CQ08493 712 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 NEK1Q96PY6 1258 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 TRMT1Q9NXH9 659 aaKnown RBP14.01□□□□□ -0.17
MSH6-204ENST00000445503 JAK2O60674 1132 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 FKBP4Q02790 459 aaKnown RBP eCLIP14.01□□□□□ -0.17
MSH6-204ENST00000445503 CHST3Q7LGC8 479 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 TTC6Q86TZ1 520 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 ANKRD24Q8TF21 1146 aa14.01□□□□□ -0.17
MSH6-204ENST00000445503 TLR7Q9NYK1 1049 aaKnown RBP14.01□□□□□ -0.17
MSH6-204ENST00000445503 APPP05067 770 aa14□□□□□ -0.17
MSH6-204ENST00000445503 AKAP4Q5JQC9 854 aa14□□□□□ -0.17
MSH6-204ENST00000445503 PRIMPOLQ96LW4 560 aa14□□□□□ -0.17
MSH6-204ENST00000445503 EIF2AK3Q9NZJ5 1116 aaKnown RBP14□□□□□ -0.17
MSH6-204ENST00000445503 A0A0D9SFI3 127 aa14□□□□□ -0.17
MSH6-204ENST00000445503 Q6ZUG5 572 aa14□□□□□ -0.17
MSH6-204ENST00000445503 CCDC112Q8NEF3 446 aa14□□□□□ -0.17
MSH6-204ENST00000445503 LINS1Q8NG48 757 aa14□□□□□ -0.17
MSH6-204ENST00000445503 A0A087WZG4 1122 aa14□□□□□ -0.17
MSH6-204ENST00000445503 IGSF3O75054 1194 aa14□□□□□ -0.17
MSH6-204ENST00000445503 ALDH1L1O75891 902 aa14□□□□□ -0.17
MSH6-204ENST00000445503 SMC2O95347 1197 aa14□□□□□ -0.17
MSH6-204ENST00000445503 TNNT1P13805 278 aa14□□□□□ -0.17
MSH6-204ENST00000445503 ZNF771Q7L3S4 317 aaPredicted RBP14□□□□□ -0.17
MSH6-204ENST00000445503 KCNH5Q8NCM2 988 aa14□□□□□ -0.17
MSH6-204ENST00000445503 TOMM22Q9NS69 142 aa14□□□□□ -0.17
MSH6-204ENST00000445503 GOLIM4O00461 696 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 AMOTQ4VCS5 1084 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 STK11IPQ8N1F8 1099 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 CFAP45Q9UL16 551 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 SSH2Q76I76 1423 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 KRT32Q14532 448 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 IP6K1Q92551 441 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 PYCARDQ9ULZ3 195 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 TERF1P54274 439 aa13.99□□□□□ -0.17
MSH6-204ENST00000445503 RNMTO43148 476 aaKnown RBP13.98□□□□□ -0.17
MSH6-204ENST00000445503 DDX19AQ9NUU7 478 aaKnown RBP13.98□□□□□ -0.17
MSH6-204ENST00000445503 STK38Q15208 465 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 HOMER1Q86YM7 354 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 MYRIPQ8NFW9 859 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 SNRKQ9NRH2 765 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 TPM4P67936 248 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 LRMPQ12912 555 aa13.98□□□□□ -0.17
MSH6-204ENST00000445503 TATP17735 454 aaPredicted RBP13.97□□□□□ -0.17
MSH6-204ENST00000445503 POLA2Q14181 598 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 SYNE3Q6ZMZ3 975 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 ZSWIM6Q9HCJ5 1215 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 SIGLEC1Q9BZZ2 1709 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 TFCP2Q12800 502 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 ERCC4Q92889 916 aaPredicted RBP13.97□□□□□ -0.17
MSH6-204ENST00000445503 TBX22Q9Y458 520 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 BIN1O00499 593 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 RIOK3O14730 519 aaKnown RBP13.97□□□□□ -0.17
MSH6-204ENST00000445503 HAND2P61296 217 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 NFATC2IPQ8NCF5 419 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 ISM2Q6H9L7 571 aa13.97□□□□□ -0.17
MSH6-204ENST00000445503 CCAR1Q8IX12 1150 aaKnown RBP13.97□□□□□ -0.17
MSH6-204ENST00000445503 SEC62Q99442 399 aaKnown RBP13.97□□□□□ -0.17
MSH6-204ENST00000445503 CBX8Q9HC52 389 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms