RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 DDX19BQ9UMR2 479 aa15.54■□□□□ 0.08
LINC00339-204ENST00000434233 N4BP2Q86UW6 1770 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-204ENST00000434233 UBN2Q6ZU65 1347 aa15.53■□□□□ 0.08
LINC00339-204ENST00000434233 AFDNP55196 1824 aaKnown RBP15.53■□□□□ 0.08
LINC00339-204ENST00000434233 H7C1W4 665 aa15.53■□□□□ 0.08
LINC00339-204ENST00000434233 ZBTB7BO15156 539 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-204ENST00000434233 SUSD4Q5VX71 490 aa15.53■□□□□ 0.08
LINC00339-204ENST00000434233 UTP14AQ9BVJ6 771 aaKnown RBP15.53■□□□□ 0.08
LINC00339-204ENST00000434233 UTYO14607 1347 aa15.52■□□□□ 0.08
LINC00339-204ENST00000434233 PCCAP05165 728 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-204ENST00000434233 TPTE2Q6XPS3 522 aa15.52■□□□□ 0.08
LINC00339-204ENST00000434233 ZBTB38Q8NAP3 1195 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-204ENST00000434233 NYXQ9GZU5 481 aa15.52■□□□□ 0.08
LINC00339-204ENST00000434233 C9orf78Q9NZ63 289 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-204ENST00000434233 TRMT112Q9UI30 125 aaKnown RBP15.52■□□□□ 0.08
LINC00339-204ENST00000434233 HDAC5Q9UQL6 1122 aa15.52■□□□□ 0.08
LINC00339-204ENST00000434233 PSDA5PKW4 1024 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-204ENST00000434233 GRM8O00222 908 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 SERPINB2P05120 415 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 GNAI3P08754 354 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 CRBNQ96SW2 442 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 MTFR1LQ9H019 292 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 CASZ1Q86V15 1759 aa15.51■□□□□ 0.07
LINC00339-204ENST00000434233 CARMIL3Q8ND23 1372 aa15.5■□□□□ 0.07
LINC00339-204ENST00000434233 POLRMTO00411 1230 aaKnown RBP15.5■□□□□ 0.07
LINC00339-204ENST00000434233 AAMPQ13685 434 aa15.5■□□□□ 0.07
LINC00339-204ENST00000434233 NBPF5PQ86XG9 351 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-204ENST00000434233 PARP3Q9Y6F1 533 aa15.5■□□□□ 0.07
LINC00339-204ENST00000434233 CDHR2Q9BYE9 1310 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 FAM177BA6PVY3 158 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 NTSR2O95665 410 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 NEFLP07196 543 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 MMP10P09238 476 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 NBPF7P0C2Y1 421 aaPredicted RBP15.49■□□□□ 0.07
LINC00339-204ENST00000434233 CASP7P55210 303 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 DDR1Q08345 913 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 SLC10A5Q5PT55 438 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 MSL1Q68DK7 614 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 MEIS3Q99687 375 aa15.49■□□□□ 0.07
LINC00339-204ENST00000434233 SH3TC1Q8TE82 1336 aa15.48■□□□□ 0.07
LINC00339-204ENST00000434233 ZBTB7AO95365 584 aa15.48■□□□□ 0.07
LINC00339-204ENST00000434233 UBTFL1P0CB47 393 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-204ENST00000434233 HSP90B1P14625 803 aaKnown RBP15.48■□□□□ 0.07
LINC00339-204ENST00000434233 GTF2E1P29083 439 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-204ENST00000434233 IRX6P78412 446 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-204ENST00000434233 FAM89AQ96GI7 184 aa15.48■□□□□ 0.07
LINC00339-204ENST00000434233 ZBTB40Q9NUA8 1239 aa15.48■□□□□ 0.07
LINC00339-204ENST00000434233 COL24A1Q17RW2 1714 aa15.48■□□□□ 0.07
LINC00339-204ENST00000434233 UBE3BQ7Z3V4 1068 aa15.47■□□□□ 0.07
LINC00339-204ENST00000434233 EXOC6Q8TAG9 804 aa15.47■□□□□ 0.07
LINC00339-204ENST00000434233 JARID2Q92833 1246 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-204ENST00000434233 PLA2G12BQ9BX93 195 aa15.47■□□□□ 0.07
LINC00339-204ENST00000434233 ATF5Q9Y2D1 282 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-204ENST00000434233 IRS4O14654 1257 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-204ENST00000434233 GNAI2P04899 355 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 POLD1P28340 1107 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 ERFEQ4G0M1 354 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 PRR5LQ6MZQ0 368 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 NUTM1Q86Y26 1132 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 SYNE4Q8N205 404 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 CNBD1Q8NA66 436 aa15.46■□□□□ 0.07
LINC00339-204ENST00000434233 NPHP1O15259 732 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 PDE8AO60658 829 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 ST5P78524 1137 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 RTL5Q5HYW3 569 aaPredicted RBP15.45■□□□□ 0.06
LINC00339-204ENST00000434233 ERICH6BQ5W0A0 696 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 SUCLG2Q96I99 432 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 NRXN2Q9P2S2 1712 aa15.45■□□□□ 0.06
LINC00339-204ENST00000434233 KAZALD1Q96I82 304 aa15.44■□□□□ 0.06
LINC00339-204ENST00000434233 SGIP1Q9BQI5 828 aa15.44■□□□□ 0.06
LINC00339-204ENST00000434233 CSF1RP07333 972 aa15.43■□□□□ 0.06
LINC00339-204ENST00000434233 HCLS1P14317 486 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-204ENST00000434233 FOXO4P98177 505 aa15.43■□□□□ 0.06
LINC00339-204ENST00000434233 NLRP3Q96P20 1036 aa15.43■□□□□ 0.06
LINC00339-204ENST00000434233 BRIP1Q9BX63 1249 aa15.43■□□□□ 0.06
LINC00339-204ENST00000434233 SPON1Q9HCB6 807 aa15.43■□□□□ 0.06
LINC00339-204ENST00000434233 LRRFIP2Q9Y608 721 aaKnown RBP15.43■□□□□ 0.06
LINC00339-204ENST00000434233 PTGER2P43116 358 aa15.42■□□□□ 0.06
LINC00339-204ENST00000434233 ATP8B2P98198 1209 aa15.42■□□□□ 0.06
LINC00339-204ENST00000434233 SF3B3Q15393 1217 aaKnown RBP15.42■□□□□ 0.06
LINC00339-204ENST00000434233 RABL6Q3YEC7 729 aaPredicted RBP15.42■□□□□ 0.06
LINC00339-204ENST00000434233 RPAP2Q8IXW5 612 aaPredicted RBP15.42■□□□□ 0.06
LINC00339-204ENST00000434233 RIC1Q4ADV7 1423 aa15.42■□□□□ 0.06
LINC00339-204ENST00000434233 KLRG2A4D1S0 409 aaPredicted RBP15.41■□□□□ 0.06
LINC00339-204ENST00000434233 EPHA10Q5JZY3 1008 aa15.41■□□□□ 0.06
LINC00339-204ENST00000434233 CCDC24Q8N4L8 307 aa15.41■□□□□ 0.06
LINC00339-204ENST00000434233 TTLL11Q8NHH1 800 aa15.41■□□□□ 0.06
LINC00339-204ENST00000434233 BICC1Q9H694 974 aaKnown RBP15.41■□□□□ 0.06
LINC00339-204ENST00000434233 PDZRN3Q9UPQ7 1066 aa15.41■□□□□ 0.06
LINC00339-204ENST00000434233 DDX60Q8IY21 1712 aaKnown RBP15.4■□□□□ 0.06
LINC00339-204ENST00000434233 PDE6BP35913 854 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 MTX1Q13505 466 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 LMBR1LQ6UX01 489 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 ANKRD44Q8N8A2 993 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 C1orf115Q9H7X2 142 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 MYH3P11055 1940 aa15.4■□□□□ 0.06
LINC00339-204ENST00000434233 ABCC12Q96J65 1359 aa15.39■□□□□ 0.05
LINC00339-204ENST00000434233 CTSWP56202 376 aa15.39■□□□□ 0.05
LINC00339-204ENST00000434233 CEP85Q6P2H3 762 aa15.39■□□□□ 0.05
LINC00339-204ENST00000434233 LAMB2P55268 1798 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms