RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SPG7Q9UQ90 795 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 MED23Q9ULK4 1368 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 AFDNP55196 1824 aaKnown RBP16.36■□□□□ 0.21
COL6A3-207ENST00000433762 ANXA1P04083 346 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 SASH1O94885 1247 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 PDCP20941 246 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 PTH1RQ03431 593 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 CHAMP1Q96JM3 812 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 JAKMIP1Q96N16 626 aaKnown RBP16.35■□□□□ 0.21
COL6A3-207ENST00000433762 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.35■□□□□ 0.21
COL6A3-207ENST00000433762 DCCP43146 1447 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 ZNF790Q6PG37 636 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 BICC1Q9H694 974 aaKnown RBP16.35■□□□□ 0.21
COL6A3-207ENST00000433762 SLC52A2Q9HAB3 445 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 STRCP1A6NGW2 1772 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 ARFGEF2Q9Y6D5 1785 aa16.35■□□□□ 0.21
COL6A3-207ENST00000433762 KDM6AO15550 1401 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-207ENST00000433762 GADD45BO75293 160 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-207ENST00000433762 CWF19L2Q2TBE0 894 aaKnown RBP16.34■□□□□ 0.21
COL6A3-207ENST00000433762 CREB3L3Q68CJ9 461 aa16.34■□□□□ 0.21
COL6A3-207ENST00000433762 MTMR6Q9Y217 621 aa16.34■□□□□ 0.21
COL6A3-207ENST00000433762 NPHP3Q7Z494 1330 aa16.34■□□□□ 0.21
COL6A3-207ENST00000433762 PRPF40BQ6NWY9 871 aaKnown RBP16.34■□□□□ 0.21
COL6A3-207ENST00000433762 METTL22Q9BUU2 404 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-207ENST00000433762 COPRSQ9NQ92 184 aa16.34■□□□□ 0.21
COL6A3-207ENST00000433762 RBM8AQ9Y5S9 174 aaKnown RBP16.34■□□□□ 0.21
COL6A3-207ENST00000433762 ELP1O95163 1332 aa16.33■□□□□ 0.21
COL6A3-207ENST00000433762 NEURL1BA8MQ27 555 aa16.33■□□□□ 0.2
COL6A3-207ENST00000433762 KRT28Q7Z3Y7 464 aa16.33■□□□□ 0.2
COL6A3-207ENST00000433762 EAF2Q96CJ1 260 aaPredicted RBP16.33■□□□□ 0.2
COL6A3-207ENST00000433762 IGKV5-2P06315 115 aa16.33■□□□□ 0.2
COL6A3-207ENST00000433762 GJB2P29033 226 aa16.33■□□□□ 0.2
COL6A3-207ENST00000433762 ORAI2Q96SN7 254 aa16.33■□□□□ 0.2
COL6A3-207ENST00000433762 PA2G4Q9UQ80 394 aaKnown RBP16.33■□□□□ 0.2
COL6A3-207ENST00000433762 GCKRQ14397 625 aa16.32■□□□□ 0.2
COL6A3-207ENST00000433762 KRT32Q14532 448 aa16.32■□□□□ 0.2
COL6A3-207ENST00000433762 RAPGEF4Q8WZA2 1011 aa16.32■□□□□ 0.2
COL6A3-207ENST00000433762 CNPY2Q9Y2B0 182 aa16.32■□□□□ 0.2
COL6A3-207ENST00000433762 NMIQ13287 307 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-207ENST00000433762 USPL1Q5W0Q7 1092 aa16.31■□□□□ 0.2
COL6A3-207ENST00000433762 RIC3Q7Z5B4 369 aa16.31■□□□□ 0.2
COL6A3-207ENST00000433762 SLC27A2O14975 620 aa16.31■□□□□ 0.2
COL6A3-207ENST00000433762 ADCK5Q3MIX3 580 aa16.31■□□□□ 0.2
COL6A3-207ENST00000433762 RABL6Q3YEC7 729 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-207ENST00000433762 GLI3P10071 1580 aa16.31■□□□□ 0.2
COL6A3-207ENST00000433762 ZBTB7CA1YPR0 619 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 TATP17735 454 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-207ENST00000433762 ATP5JP18859 108 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 CCDC83Q8IWF9 413 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 AXIN2Q9Y2T1 843 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 TMEM94Q12767 1356 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 SPEF2Q9C093 1822 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 LARGE1O95461 756 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 PHKG2P15735 406 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 FUCA2Q9BTY2 467 aa16.3■□□□□ 0.2
COL6A3-207ENST00000433762 ME3Q16798 604 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 LRP10Q7Z4F1 713 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 GDPD2Q9HCC8 539 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 ZNF335Q9H4Z2 1342 aaPredicted RBP16.29■□□□□ 0.2
COL6A3-207ENST00000433762 RPS6KB1P23443 525 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 ST3GAL1Q11201 340 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 BLOC1S2Q6QNY1 142 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 AEBP2Q6ZN18 517 aaPredicted RBP16.29■□□□□ 0.2
COL6A3-207ENST00000433762 IFNL2Q8IZJ0 200 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 DCAF5Q96JK2 942 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 C19orf44Q9H6X5 657 aa16.29■□□□□ 0.2
COL6A3-207ENST00000433762 SNRPA1P09661 255 aaKnown RBP16.28■□□□□ 0.2
COL6A3-207ENST00000433762 KCNJ4P48050 445 aa16.28■□□□□ 0.2
COL6A3-207ENST00000433762 FSD1Q9BTV5 496 aa16.28■□□□□ 0.2
COL6A3-207ENST00000433762 PRAMEF22A3QJZ6 481 aa16.28■□□□□ 0.2
COL6A3-207ENST00000433762 RNF214Q8ND24 703 aa16.28■□□□□ 0.2
COL6A3-207ENST00000433762 UBE2Q2Q8WVN8 375 aa16.28■□□□□ 0.2
COL6A3-207ENST00000433762 MEGF6O75095 1541 aa16.27■□□□□ 0.2
COL6A3-207ENST00000433762 UBR2Q8IWV8 1755 aa16.27■□□□□ 0.2
COL6A3-207ENST00000433762 RFX5P48382 616 aaPredicted RBP16.27■□□□□ 0.2
COL6A3-207ENST00000433762 KRT85P78386 507 aa16.27■□□□□ 0.2
COL6A3-207ENST00000433762 FAM227BQ96M60 508 aa16.27■□□□□ 0.2
COL6A3-207ENST00000433762 NUP188Q5SRE5 1749 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 A0A0D9SFI3 127 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 TPM3P06753 285 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 HSP90AA2PQ14568 343 aaPredicted RBP16.27■□□□□ 0.19
COL6A3-207ENST00000433762 ANKRD13DQ6ZTN6 518 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 XAGE3Q8WTP9 111 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 TPCN1Q9ULQ1 816 aa16.27■□□□□ 0.19
COL6A3-207ENST00000433762 KIAA2012Q0VF49 1180 aa16.26■□□□□ 0.19
COL6A3-207ENST00000433762 CCDC8Q9H0W5 538 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-207ENST00000433762 FMNL2Q96PY5 1086 aa16.26■□□□□ 0.19
COL6A3-207ENST00000433762 SCAND2PQ9GZW5 306 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-207ENST00000433762 U3KPZ7 1027 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-207ENST00000433762 FIBPO43427 364 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 TAF5LO75529 589 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 PTMAP06454 111 aaKnown RBP16.25■□□□□ 0.19
COL6A3-207ENST00000433762 CPA1P15085 419 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 TNNI3KQ59H18 835 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 LARP1BQ659C4 914 aaKnown RBP16.25■□□□□ 0.19
COL6A3-207ENST00000433762 COPS6Q7L5N1 327 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 MAP7D2Q96T17 732 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 GPR108Q9NPR9 543 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 FPGT-TNNI3KV9GXZ4 949 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms