RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 REC8O95072 547 aa11.59□□□□□ -0.55
HMGB4-201ENST00000425537 TRIM28Q13263 835 aaKnown RBP11.59□□□□□ -0.55
HMGB4-201ENST00000425537 TBC1D9Q6ZT07 1266 aa11.59□□□□□ -0.55
HMGB4-201ENST00000425537 DNAJC10Q8IXB1 793 aa11.59□□□□□ -0.55
HMGB4-201ENST00000425537 SUCLG2Q96I99 432 aa11.59□□□□□ -0.55
HMGB4-201ENST00000425537 RREB1Q92766 1687 aa11.59□□□□□ -0.55
HMGB4-201ENST00000425537 CICQ96RK0 1608 aaPredicted RBP11.58□□□□□ -0.56
HMGB4-201ENST00000425537 SEC24BO95487 1268 aa11.58□□□□□ -0.56
HMGB4-201ENST00000425537 UBE3BQ7Z3V4 1068 aa11.58□□□□□ -0.56
HMGB4-201ENST00000425537 C16orf71Q8IYS4 520 aaPredicted RBP11.58□□□□□ -0.56
HMGB4-201ENST00000425537 BICC1Q9H694 974 aaKnown RBP11.58□□□□□ -0.56
HMGB4-201ENST00000425537 SALL3Q9BXA9 1300 aa11.58□□□□□ -0.56
HMGB4-201ENST00000425537 H7C1W4 665 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 IFIT2P09913 472 aaKnown RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 CYP19A1P11511 503 aaPredicted RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 GSPT1P15170 499 aaKnown RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 SDSP20132 328 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 IL6STP40189 918 aaPredicted RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 RBM25P49756 843 aaKnown RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 TCIRG1Q13488 830 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 IL27Q8NEV9 243 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 CAMKK2Q96RR4 588 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 BCL11AQ9H165 835 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 MAP3K15Q6ZN16 1313 aa11.57□□□□□ -0.56
HMGB4-201ENST00000425537 USP42Q9H9J4 1324 aaKnown RBP11.57□□□□□ -0.56
HMGB4-201ENST00000425537 PALLDQ8WX93 1383 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 ZNF831Q5JPB2 1677 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 ERVV-1B6SEH8 477 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 ATP5J2-PTCD1G3V325 749 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 EPB41L2O43491 1005 aaKnown RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 GLRX3O76003 335 aaKnown RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 HSP90B1P14625 803 aaKnown RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 PIP4K2AP48426 406 aaPredicted RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 RABL6Q3YEC7 729 aaPredicted RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 GIGYF2Q6Y7W6 1299 aaKnown RBP11.56□□□□□ -0.56
HMGB4-201ENST00000425537 TTLL7Q6ZT98 887 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 PROM2Q8N271 834 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 ZBTB3Q9H5J0 574 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 COPRSQ9NQ92 184 aa11.56□□□□□ -0.56
HMGB4-201ENST00000425537 LY75O60449 1722 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 PSDA5PKW4 1024 aaPredicted RBP11.55□□□□□ -0.56
HMGB4-201ENST00000425537 TRIM6-TRIM34B2RNG4 842 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 HMGB2P26583 209 aaKnown RBP11.55□□□□□ -0.56
HMGB4-201ENST00000425537 TXNRD1Q16881 649 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 SMIM5Q71RC9 77 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 CNTROBQ8N137 903 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 OTUD7AQ8TE49 926 aaPredicted RBP11.55□□□□□ -0.56
HMGB4-201ENST00000425537 ISCA1Q9BUE6 129 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 ANO8Q9HCE9 1232 aaPredicted RBP11.55□□□□□ -0.56
HMGB4-201ENST00000425537 IL1RAPL2Q9NP60 686 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 LRRC4BQ9NT99 713 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 FBXO3Q9UK99 471 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 ZNF330Q9Y3S2 320 aaPredicted RBP11.55□□□□□ -0.56
HMGB4-201ENST00000425537 TJP1Q07157 1748 aa11.55□□□□□ -0.56
HMGB4-201ENST00000425537 PCCAP05165 728 aaPredicted RBP11.54□□□□□ -0.56
HMGB4-201ENST00000425537 MCCP23508 829 aa11.54□□□□□ -0.56
HMGB4-201ENST00000425537 CCDC125Q86Z20 511 aa11.54□□□□□ -0.56
HMGB4-201ENST00000425537 KAZALD1Q96I82 304 aa11.54□□□□□ -0.56
HMGB4-201ENST00000425537 ECHDC1Q9NTX5 307 aa11.54□□□□□ -0.56
HMGB4-201ENST00000425537 CCDC87Q9NVE4 849 aa11.54□□□□□ -0.56
HMGB4-201ENST00000425537 LOC102724428A0A0B4J2F2 783 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 HIP1O00291 1037 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 ATP6V1AP38606 617 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 CASP7P55210 303 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 SIK1P57059 783 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 HSCBQ8IWL3 235 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 RUFY2Q8WXA3 655 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 RILPL2Q969X0 211 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 ARXQ96QS3 562 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 CCNL1Q9UK58 526 aaPredicted RBP11.53□□□□□ -0.56
HMGB4-201ENST00000425537 RGPD3A6NKT7 1758 aaPredicted RBP11.53□□□□□ -0.56
HMGB4-201ENST00000425537 ANKRD36CQ5JPF3 1778 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 RGPD4Q7Z3J3 1758 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 CDHR2Q9BYE9 1310 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 TUBGCP6Q96RT7 1819 aa11.53□□□□□ -0.56
HMGB4-201ENST00000425537 AK9Q5TCS8 1911 aa11.52□□□□□ -0.56
HMGB4-201ENST00000425537 RGL2O15211 777 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 R3HDM1Q15032 1099 aaKnown RBP11.52□□□□□ -0.57
HMGB4-201ENST00000425537 ZNF827Q17R98 1081 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 LMBR1LQ6UX01 489 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 AACSQ86V21 672 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 DZIP3Q86Y13 1208 aaKnown RBP11.52□□□□□ -0.57
HMGB4-201ENST00000425537 NUTM1Q86Y26 1132 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 ZBTB38Q8NAP3 1195 aaPredicted RBP11.52□□□□□ -0.57
HMGB4-201ENST00000425537 AK7Q96M32 723 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 SLC4A9Q96Q91 983 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 ANP32EQ9BTT0 268 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 PLA2G12BQ9BX93 195 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 GPR108Q9NPR9 543 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 ZNF652Q9Y2D9 606 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 CHMP3Q9Y3E7 222 aa11.52□□□□□ -0.57
HMGB4-201ENST00000425537 TAF1LQ8IZX4 1826 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 PLSCR1O15162 318 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 CIAO1O76071 339 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 ITPK1Q13572 414 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 PARP10Q53GL7 1025 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 TICAM2Q86XR7 235 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 LINC00116Q8NCU8 138 aa11.51□□□□□ -0.57
HMGB4-201ENST00000425537 PA2G4Q9UQ80 394 aaKnown RBP11.51□□□□□ -0.57
HMGB4-201ENST00000425537 IL15P40933 162 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms