RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 TTC21AQ8NDW8 1320 aa25.25■■□□□ 1.63
USP48-205ENST00000421625 ZNF75DP51815 510 aa25.24■■□□□ 1.63
USP48-205ENST00000421625 RBM8AQ9Y5S9 174 aaKnown RBP25.24■■□□□ 1.63
USP48-205ENST00000421625 TNNT1P13805 278 aa25.24■■□□□ 1.63
USP48-205ENST00000421625 PLA2G4DQ86XP0 818 aa25.24■■□□□ 1.63
USP48-205ENST00000421625 SMTNL1A8MU46 457 aa25.23■■□□□ 1.63
USP48-205ENST00000421625 RBM33Q96EV2 1170 aaKnown RBP25.23■■□□□ 1.63
USP48-205ENST00000421625 CCDC171Q6TFL3 1326 aa25.23■■□□□ 1.63
USP48-205ENST00000421625 CREB3L3Q68CJ9 461 aa25.23■■□□□ 1.63
USP48-205ENST00000421625 FEZ1Q99689 392 aa25.22■■□□□ 1.63
USP48-205ENST00000421625 BCL11BQ9C0K0 894 aaPredicted RBP25.22■■□□□ 1.63
USP48-205ENST00000421625 ZKSCAN1P17029 563 aaPredicted RBP25.22■■□□□ 1.63
USP48-205ENST00000421625 BEND3Q5T5X7 828 aa25.22■■□□□ 1.63
USP48-205ENST00000421625 SPATA32Q96LK8 384 aa25.22■■□□□ 1.63
USP48-205ENST00000421625 GOLGA6L4A6NEF3 574 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 KCNJ4P48050 445 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 FAM227BQ96M60 508 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 CTNNA3Q9UI47 895 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 PI4KAP2A4QPH2 592 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 HSP90AB4PQ58FF6 505 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 CLASRPQ8N2M8 674 aaKnown RBP25.21■■□□□ 1.63
USP48-205ENST00000421625 PI4KAP1Q8N8J0 262 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 ECHDC1Q9NTX5 307 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 TBX22Q9Y458 520 aa25.21■■□□□ 1.63
USP48-205ENST00000421625 CACTINQ8WUQ7 758 aaKnown RBP25.2■■□□□ 1.62
USP48-205ENST00000421625 DNAJC25Q9H1X3 360 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 OGFRQ9NZT2 677 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 ANXA1P04083 346 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 CCDC144BQ3MJ40 725 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 LARP1Q6PKG0 1096 aaKnown RBP25.2■■□□□ 1.62
USP48-205ENST00000421625 CCDC144CPQ8IYA2 1237 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 CLSTN2Q9H4D0 955 aa25.2■■□□□ 1.62
USP48-205ENST00000421625 NR1I2O75469 434 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 TDRD7Q8NHU6 1098 aaKnown RBP25.19■■□□□ 1.62
USP48-205ENST00000421625 LEO1Q8WVC0 666 aaPredicted RBP25.19■■□□□ 1.62
USP48-205ENST00000421625 DNAAF4Q8WXU2 420 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 CHPF2Q9P2E5 772 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 PA2G4Q9UQ80 394 aaKnown RBP25.19■■□□□ 1.62
USP48-205ENST00000421625 KCNA6P17658 529 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 TAF6LQ9Y6J9 622 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 ARHGAP23Q9P227 1491 aa25.19■■□□□ 1.62
USP48-205ENST00000421625 RBM43Q6ZSC3 357 aaKnown RBP25.18■■□□□ 1.62
USP48-205ENST00000421625 CLIP2Q9UDT6 1046 aa25.18■■□□□ 1.62
USP48-205ENST00000421625 SLIT1O75093 1534 aa25.18■■□□□ 1.62
USP48-205ENST00000421625 ZNF165P49910 485 aa25.18■■□□□ 1.62
USP48-205ENST00000421625 SYCP1Q15431 976 aa25.18■■□□□ 1.62
USP48-205ENST00000421625 SCAND2PQ9GZW5 306 aaPredicted RBP25.18■■□□□ 1.62
USP48-205ENST00000421625 DDX19AQ9NUU7 478 aaKnown RBP25.18■■□□□ 1.62
USP48-205ENST00000421625 SLC27A2O14975 620 aa25.18■■□□□ 1.62
USP48-205ENST00000421625 TPD52L1Q16890 204 aaPredicted RBP25.18■■□□□ 1.62
USP48-205ENST00000421625 NPHP3Q7Z494 1330 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 PDCP20941 246 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 STK3Q13188 491 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 NMIQ13287 307 aaPredicted RBP25.17■■□□□ 1.62
USP48-205ENST00000421625 CCDC112Q8NEF3 446 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 LTV1Q96GA3 475 aaPredicted RBP25.17■■□□□ 1.62
USP48-205ENST00000421625 IFIT2P09913 472 aaKnown RBP25.17■■□□□ 1.62
USP48-205ENST00000421625 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.17■■□□□ 1.62
USP48-205ENST00000421625 MAP4K1Q92918 833 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 PGBD1Q96JS3 809 aa25.17■■□□□ 1.62
USP48-205ENST00000421625 EVI5LQ96CN4 794 aa25.16■■□□□ 1.62
USP48-205ENST00000421625 CHD2O14647 1828 aaKnown RBP25.16■■□□□ 1.62
USP48-205ENST00000421625 FGD1P98174 961 aa25.16■■□□□ 1.62
USP48-205ENST00000421625 ZNF592Q92610 1267 aa25.16■■□□□ 1.62
USP48-205ENST00000421625 BICD2Q8TD16 824 aa25.15■■□□□ 1.62
USP48-205ENST00000421625 AACSQ86V21 672 aa25.14■■□□□ 1.62
USP48-205ENST00000421625 USHBP1Q8N6Y0 703 aa25.14■■□□□ 1.62
USP48-205ENST00000421625 BABAM1Q9NWV8 329 aa25.14■■□□□ 1.62
USP48-205ENST00000421625 PAXBP1Q9Y5B6 917 aa25.14■■□□□ 1.62
USP48-205ENST00000421625 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.14■■□□□ 1.62
USP48-205ENST00000421625 ARID5BQ14865 1188 aa25.14■■□□□ 1.61
USP48-205ENST00000421625 TOB2Q14106 344 aaPredicted RBP25.13■■□□□ 1.61
USP48-205ENST00000421625 BLOC1S2Q6QNY1 142 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 GPATCH3Q96I76 525 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 CGNQ9P2M7 1197 aaKnown RBP25.13■■□□□ 1.61
USP48-205ENST00000421625 PSMA5P28066 241 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 NUTM2GQ5VZR2 741 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 ZNF771Q7L3S4 317 aaPredicted RBP25.13■■□□□ 1.61
USP48-205ENST00000421625 DDX41Q9UJV9 622 aaKnown RBP25.13■■□□□ 1.61
USP48-205ENST00000421625 NWD1Q149M9 1564 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 USP27XA6NNY8 438 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 HOXC9P31274 260 aa25.13■■□□□ 1.61
USP48-205ENST00000421625 ADCY9O60503 1353 aa25.12■■□□□ 1.61
USP48-205ENST00000421625 A0A0D9SFI3 127 aa25.12■■□□□ 1.61
USP48-205ENST00000421625 CEP135Q66GS9 1140 aa25.12■■□□□ 1.61
USP48-205ENST00000421625 NGDNQ8NEJ9 315 aaKnown RBP25.12■■□□□ 1.61
USP48-205ENST00000421625 KCNQ3O43525 872 aa25.11■■□□□ 1.61
USP48-205ENST00000421625 RPS6KB1P23443 525 aa25.11■■□□□ 1.61
USP48-205ENST00000421625 EIF4A1P60842 406 aaKnown RBP25.11■■□□□ 1.61
USP48-205ENST00000421625 NPHP4O75161 1426 aaPredicted RBP25.11■■□□□ 1.61
USP48-205ENST00000421625 JAK2O60674 1132 aa25.1■■□□□ 1.61
USP48-205ENST00000421625 PDIA4P13667 645 aaKnown RBP25.1■■□□□ 1.61
USP48-205ENST00000421625 MTX1Q13505 466 aa25.1■■□□□ 1.61
USP48-205ENST00000421625 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.1■■□□□ 1.61
USP48-205ENST00000421625 DDX11Q96FC9 970 aa25.1■■□□□ 1.61
USP48-205ENST00000421625 ADGRL3Q9HAR2 1447 aa25.1■■□□□ 1.61
USP48-205ENST00000421625 NLRP6P59044 892 aa25.09■■□□□ 1.61
USP48-205ENST00000421625 C11orf57Q6ZUT1 292 aaPredicted RBP25.09■■□□□ 1.61
USP48-205ENST00000421625 LRRC8AQ8IWT6 810 aa25.09■■□□□ 1.61
USP48-205ENST00000421625 KIF18AQ8NI77 898 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms