RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 UTP14AQ9BVJ6 771 aaKnown RBP10.16□□□□□ -0.78
USP54-203ENST00000418501 PRAMEF22A3QJZ6 481 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 CIAO1O76071 339 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 LMBR1LQ6UX01 489 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 RAD50Q92878 1312 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 RBM25P49756 843 aaKnown RBP10.15□□□□□ -0.78
USP54-203ENST00000418501 ANAPC15P60006 121 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 ANO2Q9NQ90 1003 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 CNNM1Q9NRU3 951 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 CDHR2Q9BYE9 1310 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 IGHMBP2P38935 993 aaKnown RBP10.15□□□□□ -0.78
USP54-203ENST00000418501 ZNF772Q68DY9 489 aaPredicted RBP10.15□□□□□ -0.78
USP54-203ENST00000418501 ACSBG1Q96GR2 724 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 FSD1Q9BTV5 496 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 ABCA3Q99758 1704 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 CYP19A1P11511 503 aaPredicted RBP10.15□□□□□ -0.78
USP54-203ENST00000418501 CCDC152Q4G0S7 254 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 NUTM1Q86Y26 1132 aa10.15□□□□□ -0.78
USP54-203ENST00000418501 PDE8AO60658 829 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 IGKV5-2P06315 115 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 SKAP1Q86WV1 359 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 NEUROD6Q96NK8 337 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 ISCA1Q9BUE6 129 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 PALLDQ8WX93 1383 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 SLIT2O94813 1529 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 PSMA5P28066 241 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 CDC5LQ99459 802 aaKnown RBP10.14□□□□□ -0.79
USP54-203ENST00000418501 SIL1Q9H173 461 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 CLEC4GQ6UXB4 293 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 MPHOSPH8Q99549 860 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.14□□□□□ -0.79
USP54-203ENST00000418501 TMX4Q9H1E5 349 aaPredicted RBP10.14□□□□□ -0.79
USP54-203ENST00000418501 COL16A1Q07092 1604 aaPredicted RBP10.14□□□□□ -0.79
USP54-203ENST00000418501 EYA2O00167 538 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 RABL6Q3YEC7 729 aaPredicted RBP10.14□□□□□ -0.79
USP54-203ENST00000418501 SNX21Q969T3 373 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 PLA2G12BQ9BX93 195 aa10.14□□□□□ -0.79
USP54-203ENST00000418501 SH3TC1Q8TE82 1336 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 TTC39AQ5SRH9 613 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 TTLL7Q6ZT98 887 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 GNL3LQ9NVN8 582 aaKnown RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 CIZ1Q9ULV3 898 aaPredicted RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 RTCBQ9Y3I0 505 aaKnown RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 NBPF26B4DH59 902 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 RC3H1Q5TC82 1133 aaKnown RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 NBPF14Q5TI25 921 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 NBPF10Q6P3W6 841 aaKnown RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 FAM196AQ6ZSG2 479 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 NBPF15Q8N660 670 aa10.13□□□□□ -0.79
USP54-203ENST00000418501 USP42Q9H9J4 1324 aaKnown RBP10.13□□□□□ -0.79
USP54-203ENST00000418501 IRS4O14654 1257 aaPredicted RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 PDIA4P13667 645 aaKnown RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 CHMP5Q9NZZ3 219 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 NWD2Q9ULI1 1742 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 UQCRFS1P1P0C7P4 283 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 ESYT1Q9BSJ8 1104 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 TBC1D2BQ9UPU7 963 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 CRKLP46109 303 aaKnown RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 KRT32Q14532 448 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 TTF1Q15361 905 aaPredicted RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 METTL24Q5JXM2 366 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 GBP4Q96PP9 640 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 ZFYP08048 801 aaPredicted RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 C16orf71Q8IYS4 520 aaPredicted RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 MARCH10Q8NA82 808 aaPredicted RBP10.12□□□□□ -0.79
USP54-203ENST00000418501 AFF2P51816 1311 aa10.12□□□□□ -0.79
USP54-203ENST00000418501 IFIT1P09914 478 aaKnown RBP10.11□□□□□ -0.79
USP54-203ENST00000418501 CWC22Q9HCG8 908 aaKnown RBP10.11□□□□□ -0.79
USP54-203ENST00000418501 CCNL1Q9UK58 526 aaPredicted RBP10.11□□□□□ -0.79
USP54-203ENST00000418501 PLCH1Q4KWH8 1693 aa10.11□□□□□ -0.79
USP54-203ENST00000418501 SLC5A1P13866 664 aa10.11□□□□□ -0.79
USP54-203ENST00000418501 PIP4K2AP48426 406 aaPredicted RBP10.11□□□□□ -0.79
USP54-203ENST00000418501 TNNI3KQ59H18 835 aa10.11□□□□□ -0.79
USP54-203ENST00000418501 LDHAL6AQ6ZMR3 332 aa10.11□□□□□ -0.79
USP54-203ENST00000418501 FPGT-TNNI3KV9GXZ4 949 aa10.11□□□□□ -0.79
USP54-203ENST00000418501 RFX7Q2KHR2 1363 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 GPTP24298 496 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 ANO8Q9HCE9 1232 aaPredicted RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 NIP7Q9Y221 180 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP54-203ENST00000418501 ZBTB1Q9Y2K1 713 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 CNTNAP4Q9C0A0 1308 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 ATP5JP18859 108 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 CHMLP26374 656 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 LAMB4A4D0S4 1761 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 SIPA1L3O60292 1781 aaPredicted RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 MROH5Q6ZUA9 1318 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 K7ELQ4 463 aaPredicted RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 ADRA2BP18089 450 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 SETDB2Q96T68 719 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 QTRT2Q9H974 415 aaKnown RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 PA2G4Q9UQ80 394 aaKnown RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 GSPT1P15170 499 aaKnown RBP10.1□□□□□ -0.79
USP54-203ENST00000418501 RFC4P35249 363 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 NUCB2P80303 420 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 ANKRD1Q15327 319 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 TPTE2Q6XPS3 522 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 NLRP10Q86W26 655 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP54-203ENST00000418501 CCDC8Q9H0W5 538 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms