RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PHKG2P15735 406 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 IFNL2Q8IZJ0 200 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 CEMIPQ8WUJ3 1361 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 NEURL1BA8MQ27 555 aa16.06■□□□□ 0.16
VPS54-203ENST00000409558 LIMCH1Q9UPQ0 1083 aa16.06■□□□□ 0.16
VPS54-203ENST00000409558 CYP2E1P05181 493 aaPredicted RBP16.06■□□□□ 0.16
VPS54-203ENST00000409558 GCKRQ14397 625 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 BRD1O95696 1058 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 GPTP24298 496 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 GIMAP6Q6P9H5 292 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 FKBP4Q02790 459 aaKnown RBP eCLIP16.05■□□□□ 0.161e-12■■□□□ 14
VPS54-203ENST00000409558 PDIA6Q15084 440 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 GOLIM4O00461 696 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 STX6O43752 255 aa16.05■□□□□ 0.16
VPS54-203ENST00000409558 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 STK11IPQ8N1F8 1099 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 TMEM94Q12767 1356 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 MCM2P49736 904 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 CREB3L3Q68CJ9 461 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 PTMSP20962 102 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 GUCY1B3Q02153 619 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 ME3Q16798 604 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 LARP1BQ659C4 914 aaKnown RBP16.04■□□□□ 0.16
VPS54-203ENST00000409558 ARHGAP23Q9P227 1491 aa16.04■□□□□ 0.16
VPS54-203ENST00000409558 SNRPA1P09661 255 aaKnown RBP16.03■□□□□ 0.16
VPS54-203ENST00000409558 ANKARQ7Z5J8 1434 aa16.03■□□□□ 0.16
VPS54-203ENST00000409558 HCLS1P14317 486 aaPredicted RBP16.03■□□□□ 0.16
VPS54-203ENST00000409558 DNTTIP2Q5QJE6 756 aaKnown RBP16.03■□□□□ 0.16
VPS54-203ENST00000409558 EVI5LQ96CN4 794 aa16.03■□□□□ 0.16
VPS54-203ENST00000409558 WDR33Q9C0J8 1336 aaKnown RBP16.03■□□□□ 0.16
VPS54-203ENST00000409558 ALDH1L1O75891 902 aa16.03■□□□□ 0.16
VPS54-203ENST00000409558 FMNL2Q96PY5 1086 aa16.03■□□□□ 0.16
VPS54-203ENST00000409558 USP25Q9UHP3 1055 aa16.03■□□□□ 0.16
VPS54-203ENST00000409558 SYNE4Q8N205 404 aa16.02■□□□□ 0.16
VPS54-203ENST00000409558 DBNLQ9UJU6 430 aaKnown RBP16.02■□□□□ 0.16
VPS54-203ENST00000409558 TPCN1Q9ULQ1 816 aa16.02■□□□□ 0.16
VPS54-203ENST00000409558 BLOC1S2Q6QNY1 142 aa16.02■□□□□ 0.15
VPS54-203ENST00000409558 NPHP4O75161 1426 aaPredicted RBP16.02■□□□□ 0.15
VPS54-203ENST00000409558 HAND2P61296 217 aa16.02■□□□□ 0.15
VPS54-203ENST00000409558 CCT2P78371 535 aaKnown RBP16.02■□□□□ 0.15
VPS54-203ENST00000409558 TAF7LQ5H9L4 462 aa16.02■□□□□ 0.15
VPS54-203ENST00000409558 ERC1Q8IUD2 1116 aa16.02■□□□□ 0.15
VPS54-203ENST00000409558 CCDC171Q6TFL3 1326 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 SLIT1O75093 1534 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 A0A0G2JLW4 131 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 GOLGA6L4A6NEF3 574 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 FER1L4A9Z1Z3 1794 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 ANAPC15P60006 121 aa16.01■□□□□ 0.15
VPS54-203ENST00000409558 CKAP2LQ8IYA6 745 aa16■□□□□ 0.15
VPS54-203ENST00000409558 R3HCC1Q9Y3T6 440 aaKnown RBP16■□□□□ 0.15
VPS54-203ENST00000409558 ZSCAN21Q9Y5A6 473 aaPredicted RBP16■□□□□ 0.15
VPS54-203ENST00000409558 ADGRL3Q9HAR2 1447 aa16■□□□□ 0.15
VPS54-203ENST00000409558 JAK2O60674 1132 aa16■□□□□ 0.15
VPS54-203ENST00000409558 CCDC173Q0VFZ6 552 aa16■□□□□ 0.15
VPS54-203ENST00000409558 LRRC24Q50LG9 513 aa16■□□□□ 0.15
VPS54-203ENST00000409558 C17orf53Q8N3J3 647 aaPredicted RBP16■□□□□ 0.15
VPS54-203ENST00000409558 SPC24Q8NBT2 197 aa16■□□□□ 0.15
VPS54-203ENST00000409558 METTL22Q9BUU2 404 aaPredicted RBP16■□□□□ 0.15
VPS54-203ENST00000409558 PUS3Q9BZE2 481 aaKnown RBP16■□□□□ 0.15
VPS54-203ENST00000409558 BABAM1Q9NWV8 329 aa16■□□□□ 0.15
VPS54-203ENST00000409558 NWD1Q149M9 1564 aa16■□□□□ 0.15
VPS54-203ENST00000409558 ZSCAN22P10073 491 aaPredicted RBP16■□□□□ 0.15
VPS54-203ENST00000409558 SLC27A2O14975 620 aa16■□□□□ 0.15
VPS54-203ENST00000409558 RBM10P98175 930 aaKnown RBP16■□□□□ 0.15
VPS54-203ENST00000409558 CHMP4AQ9BY43 222 aa16■□□□□ 0.15
VPS54-203ENST00000409558 TSPY26PQ9H489 355 aa16■□□□□ 0.15
VPS54-203ENST00000409558 HOXB7P09629 217 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 CUL4AQ13619 759 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 WASHC4Q2M389 1173 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 FAM89AQ96GI7 184 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 VPS53Q5VIR6 699 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 LRSAM1Q6UWE0 723 aa15.99■□□□□ 0.15
VPS54-203ENST00000409558 CDC37L1Q7L3B6 337 aa15.98■□□□□ 0.15
VPS54-203ENST00000409558 TTC41PQ6P2S7 1318 aa15.98■□□□□ 0.15
VPS54-203ENST00000409558 RGPD2P0DJD1 1756 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 TNNI3KQ59H18 835 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 PI16Q6UXB8 463 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 BRF1Q92994 677 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 FPGT-TNNI3KV9GXZ4 949 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 MBD3O95983 291 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 F13A1P00488 732 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 CLCN1P35523 988 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 PTPN12Q05209 780 aaKnown RBP15.97■□□□□ 0.15
VPS54-203ENST00000409558 A0A087WWV3 80 aa15.97■□□□□ 0.15
VPS54-203ENST00000409558 TOPAZ1Q8N9V7 1692 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 NBPF26B4DH59 902 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 H3BQV1 296 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 IFFO2Q5TF58 517 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 NBPF14Q5TI25 921 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 NBPF10Q6P3W6 841 aaKnown RBP15.96■□□□□ 0.15
VPS54-203ENST00000409558 NBPF15Q8N660 670 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 ZCRB1Q8TBF4 217 aaKnown RBP15.96■□□□□ 0.15
VPS54-203ENST00000409558 NCOA5Q9HCD5 579 aaKnown RBP15.96■□□□□ 0.15
VPS54-203ENST00000409558 TTLL5Q6EMB2 1281 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 DCAF5Q96JK2 942 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 TTC14Q96N46 770 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 HDAC5Q9UQL6 1122 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 RGPD1P0DJD0 1748 aa15.96■□□□□ 0.15
VPS54-203ENST00000409558 SYAP1Q96A49 352 aaPredicted RBP15.96■□□□□ 0.15
VPS54-203ENST00000409558 ZNF445P59923 1031 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms