RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ECHDC1Q9NTX5 307 aa23.17■■□□□ 1.3
USP39-202ENST00000409025 MAP3K15Q6ZN16 1313 aa23.17■■□□□ 1.3
USP39-202ENST00000409025 AK9Q5TCS8 1911 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 PTPN12Q05209 780 aaKnown RBP23.16■■□□□ 1.3
USP39-202ENST00000409025 TRIM28Q13263 835 aaKnown RBP23.16■■□□□ 1.3
USP39-202ENST00000409025 LMBR1LQ6UX01 489 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 CNTROBQ8N137 903 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 ARXQ96QS3 562 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 ESYT1Q9BSJ8 1104 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 SPATA31A6Q5VVP1 1343 aa23.16■■□□□ 1.3
USP39-202ENST00000409025 NBR1Q14596 966 aa23.15■■□□□ 1.3
USP39-202ENST00000409025 FAM98CQ17RN3 349 aaKnown RBP23.15■■□□□ 1.3
USP39-202ENST00000409025 RTL5Q5HYW3 569 aaPredicted RBP23.15■■□□□ 1.3
USP39-202ENST00000409025 GIGYF2Q6Y7W6 1299 aaKnown RBP23.14■■□□□ 1.3
USP39-202ENST00000409025 FNBP4Q8N3X1 1017 aaPredicted RBP23.14■■□□□ 1.3
USP39-202ENST00000409025 ZBTB1Q9Y2K1 713 aa23.14■■□□□ 1.3
USP39-202ENST00000409025 HSP90AB3PQ58FF7 597 aa23.14■■□□□ 1.29
USP39-202ENST00000409025 EAF2Q96CJ1 260 aaPredicted RBP23.14■■□□□ 1.29
USP39-202ENST00000409025 CHMP3Q9Y3E7 222 aa23.14■■□□□ 1.29
USP39-202ENST00000409025 MAP4K4O95819 1239 aaPredicted RBP23.13■■□□□ 1.29
USP39-202ENST00000409025 IL6STP40189 918 aaPredicted RBP23.13■■□□□ 1.29
USP39-202ENST00000409025 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.12■■□□□ 1.29
USP39-202ENST00000409025 ATP6V1AP38606 617 aa23.11■■□□□ 1.29
USP39-202ENST00000409025 CCDC8Q9H0W5 538 aaPredicted RBP23.11■■□□□ 1.29
USP39-202ENST00000409025 PCCAP05165 728 aaPredicted RBP23.1■■□□□ 1.29
USP39-202ENST00000409025 RABEP1Q15276 862 aa23.1■■□□□ 1.29
USP39-202ENST00000409025 SMARCC1Q92922 1105 aaPredicted RBP23.1■■□□□ 1.29
USP39-202ENST00000409025 LOC102724428A0A0B4J2F2 783 aa23.1■■□□□ 1.29
USP39-202ENST00000409025 SIK1P57059 783 aa23.1■■□□□ 1.29
USP39-202ENST00000409025 USP21Q9UK80 565 aa23.1■■□□□ 1.29
USP39-202ENST00000409025 ERVV-1B6SEH8 477 aa23.09■■□□□ 1.29
USP39-202ENST00000409025 HLFQ16534 295 aa23.09■■□□□ 1.29
USP39-202ENST00000409025 SLKQ9H2G2 1235 aaPredicted RBP23.09■■□□□ 1.29
USP39-202ENST00000409025 TFCP2Q12800 502 aa23.08■■□□□ 1.29
USP39-202ENST00000409025 DZIP3Q86Y13 1208 aaKnown RBP23.08■■□□□ 1.29
USP39-202ENST00000409025 ZBTB38Q8NAP3 1195 aaPredicted RBP23.08■■□□□ 1.29
USP39-202ENST00000409025 CCDC87Q9NVE4 849 aa23.08■■□□□ 1.29
USP39-202ENST00000409025 PALLDQ8WX93 1383 aa23.08■■□□□ 1.29
USP39-202ENST00000409025 ANKRD36CQ5JPF3 1778 aa23.08■■□□□ 1.29
USP39-202ENST00000409025 CICQ96RK0 1608 aaPredicted RBP23.07■■□□□ 1.28
USP39-202ENST00000409025 MCCP23508 829 aa23.07■■□□□ 1.28
USP39-202ENST00000409025 TNNI3KQ59H18 835 aa23.07■■□□□ 1.28
USP39-202ENST00000409025 EVI5LQ96CN4 794 aa23.07■■□□□ 1.28
USP39-202ENST00000409025 TLR7Q9NYK1 1049 aaKnown RBP23.07■■□□□ 1.28
USP39-202ENST00000409025 FPGT-TNNI3KV9GXZ4 949 aa23.07■■□□□ 1.28
USP39-202ENST00000409025 MYT1Q01538 1121 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 INTS5Q6P9B9 1019 aaKnown RBP23.06■■□□□ 1.28
USP39-202ENST00000409025 NLRP10Q86W26 655 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 PLA2G12BQ9BX93 195 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 ANO2Q9NQ90 1003 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 EPB41L2O43491 1005 aaKnown RBP23.06■■□□□ 1.28
USP39-202ENST00000409025 CRKLP46109 303 aaKnown RBP23.06■■□□□ 1.28
USP39-202ENST00000409025 FAM89AQ96GI7 184 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 ANTXR1Q9H6X2 564 aa23.06■■□□□ 1.28
USP39-202ENST00000409025 NUP98P52948 1817 aa23.05■■□□□ 1.28
USP39-202ENST00000409025 KCNQ2O43526 872 aa23.05■■□□□ 1.28
USP39-202ENST00000409025 GPTP24298 496 aa23.05■■□□□ 1.28
USP39-202ENST00000409025 EIF5P55010 431 aaKnown RBP23.05■■□□□ 1.28
USP39-202ENST00000409025 TBC1D2BQ9UPU7 963 aa23.05■■□□□ 1.28
USP39-202ENST00000409025 CDHR2Q9BYE9 1310 aa23.05■■□□□ 1.28
USP39-202ENST00000409025 SPRYD3Q8NCJ5 442 aa23.04■■□□□ 1.28
USP39-202ENST00000409025 IL15P40933 162 aaPredicted RBP23.04■■□□□ 1.28
USP39-202ENST00000409025 ITPK1Q13572 414 aa23.04■■□□□ 1.28
USP39-202ENST00000409025 MEX3CQ5U5Q3 659 aaKnown RBP23.04■■□□□ 1.28
USP39-202ENST00000409025 DIAPH3Q9NSV4 1193 aa23.04■■□□□ 1.28
USP39-202ENST00000409025 RREB1Q92766 1687 aa23.04■■□□□ 1.28
USP39-202ENST00000409025 SGSM2O43147 1006 aa23.03■■□□□ 1.28
USP39-202ENST00000409025 CCDC57Q2TAC2 916 aa23.03■■□□□ 1.28
USP39-202ENST00000409025 ATG9AQ7Z3C6 839 aa23.03■■□□□ 1.28
USP39-202ENST00000409025 RUFY2Q8WXA3 655 aa23.03■■□□□ 1.28
USP39-202ENST00000409025 K7ELQ4 463 aaPredicted RBP23.02■■□□□ 1.28
USP39-202ENST00000409025 EYA2O00167 538 aa23.02■■□□□ 1.28
USP39-202ENST00000409025 CIAO1O76071 339 aa23.02■■□□□ 1.28
USP39-202ENST00000409025 BOLA2Q9H3K6 86 aa23.02■■□□□ 1.28
USP39-202ENST00000409025 GPR108Q9NPR9 543 aa23.02■■□□□ 1.28
USP39-202ENST00000409025 DBNLQ9UJU6 430 aaKnown RBP23.02■■□□□ 1.28
USP39-202ENST00000409025 CD2BP2O95400 341 aaKnown RBP23.01■■□□□ 1.27
USP39-202ENST00000409025 CSF1RP07333 972 aa23.01■■□□□ 1.27
USP39-202ENST00000409025 HIP1O00291 1037 aa23■■□□□ 1.27
USP39-202ENST00000409025 ATP5JP18859 108 aa23■■□□□ 1.27
USP39-202ENST00000409025 NFKBIBQ15653 356 aa23■■□□□ 1.27
USP39-202ENST00000409025 CWC27Q6UX04 472 aaKnown RBP23■■□□□ 1.27
USP39-202ENST00000409025 ZNF594Q96JF6 807 aaPredicted RBP23■■□□□ 1.27
USP39-202ENST00000409025 FBXO3Q9UK99 471 aa23■■□□□ 1.27
USP39-202ENST00000409025 ZNF831Q5JPB2 1677 aa23■■□□□ 1.27
USP39-202ENST00000409025 THSD7AQ9UPZ6 1657 aa23■■□□□ 1.27
USP39-202ENST00000409025 HSPA1LP34931 641 aa23■■□□□ 1.27
USP39-202ENST00000409025 ANAPC15P60006 121 aa23■■□□□ 1.27
USP39-202ENST00000409025 ZNF34Q8IZ26 560 aa23■■□□□ 1.27
USP39-202ENST00000409025 IL25Q9H293 177 aa23■■□□□ 1.27
USP39-202ENST00000409025 TRMT112Q9UI30 125 aaKnown RBP23■■□□□ 1.27
USP39-202ENST00000409025 ST18O60284 1047 aa22.99■■□□□ 1.27
USP39-202ENST00000409025 KIAA1211Q6ZU35 1233 aa22.99■■□□□ 1.27
USP39-202ENST00000409025 LRRC24Q50LG9 513 aa22.98■■□□□ 1.27
USP39-202ENST00000409025 DBNDD2Q9BQY9 259 aa22.98■■□□□ 1.27
USP39-202ENST00000409025 IFIT5Q13325 482 aaKnown RBP22.98■■□□□ 1.27
USP39-202ENST00000409025 COL5A3P25940 1745 aaPredicted RBP22.97■■□□□ 1.27
USP39-202ENST00000409025 IRS4O14654 1257 aaPredicted RBP22.97■■□□□ 1.27
USP39-202ENST00000409025 TAF7LQ5H9L4 462 aa22.97■■□□□ 1.27
USP39-202ENST00000409025 MYH14Q7Z406 1995 aaKnown RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms