RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SETDB2Q96T68 719 aa22.71■■□□□ 1.23
SDC1-203ENST00000403076 SCN7AQ01118 1682 aa22.71■■□□□ 1.23
SDC1-203ENST00000403076 TUBGCP6Q96RT7 1819 aa22.7■■□□□ 1.23
SDC1-203ENST00000403076 AAMPQ13685 434 aa22.7■■□□□ 1.22
SDC1-203ENST00000403076 JARID2Q92833 1246 aaPredicted RBP22.7■■□□□ 1.22
SDC1-203ENST00000403076 ZBTB40Q9NUA8 1239 aa22.7■■□□□ 1.22
SDC1-203ENST00000403076 AFDNP55196 1824 aaKnown RBP22.7■■□□□ 1.22
SDC1-203ENST00000403076 N4BP2Q86UW6 1770 aaPredicted RBP22.69■■□□□ 1.22
SDC1-203ENST00000403076 NBPF7P0C2Y1 421 aaPredicted RBP22.69■■□□□ 1.22
SDC1-203ENST00000403076 RTL5Q5HYW3 569 aaPredicted RBP22.69■■□□□ 1.22
SDC1-203ENST00000403076 UBE3BQ7Z3V4 1068 aa22.69■■□□□ 1.22
SDC1-203ENST00000403076 PPP1R42Q7Z4L9 355 aa22.69■■□□□ 1.22
SDC1-203ENST00000403076 TRMT112Q9UI30 125 aaKnown RBP22.69■■□□□ 1.22
SDC1-203ENST00000403076 HDAC5Q9UQL6 1122 aa22.69■■□□□ 1.22
SDC1-203ENST00000403076 UBN2Q6ZU65 1347 aa22.69■■□□□ 1.22
SDC1-203ENST00000403076 NLGN1Q8N2Q7 840 aa22.68■■□□□ 1.22
SDC1-203ENST00000403076 UTP14AQ9BVJ6 771 aaKnown RBP22.68■■□□□ 1.22
SDC1-203ENST00000403076 ANKRD36CQ5JPF3 1778 aa22.68■■□□□ 1.22
SDC1-203ENST00000403076 GNAI2P04899 355 aa22.67■■□□□ 1.22
SDC1-203ENST00000403076 SUSD4Q5VX71 490 aa22.67■■□□□ 1.22
SDC1-203ENST00000403076 C1orf115Q9H7X2 142 aa22.67■■□□□ 1.22
SDC1-203ENST00000403076 H7C1W4 665 aa22.67■■□□□ 1.22
SDC1-203ENST00000403076 PCCAP05165 728 aaPredicted RBP22.67■■□□□ 1.22
SDC1-203ENST00000403076 NFIXQ14938 502 aa22.67■■□□□ 1.22
SDC1-203ENST00000403076 IBTKQ9P2D0 1353 aaPredicted RBP22.66■■□□□ 1.22
SDC1-203ENST00000403076 GTF2E1P29083 439 aaPredicted RBP22.66■■□□□ 1.22
SDC1-203ENST00000403076 ZBTB38Q8NAP3 1195 aaPredicted RBP22.66■■□□□ 1.22
SDC1-203ENST00000403076 FAM89AQ96GI7 184 aa22.66■■□□□ 1.22
SDC1-203ENST00000403076 UTYO14607 1347 aa22.66■■□□□ 1.22
SDC1-203ENST00000403076 NPHP1O15259 732 aa22.65■■□□□ 1.22
SDC1-203ENST00000403076 R3HDM1Q15032 1099 aaKnown RBP22.65■■□□□ 1.22
SDC1-203ENST00000403076 MSL1Q68DK7 614 aa22.65■■□□□ 1.22
SDC1-203ENST00000403076 NBPF5PQ86XG9 351 aaPredicted RBP22.65■■□□□ 1.22
SDC1-203ENST00000403076 LRRFIP2Q9Y608 721 aaKnown RBP22.65■■□□□ 1.22
SDC1-203ENST00000403076 NYXQ9GZU5 481 aa22.64■■□□□ 1.21
SDC1-203ENST00000403076 QSER1Q2KHR3 1735 aa22.64■■□□□ 1.21
SDC1-203ENST00000403076 SUCLG2Q96I99 432 aa22.63■■□□□ 1.21
SDC1-203ENST00000403076 SH3TC1Q8TE82 1336 aa22.63■■□□□ 1.21
SDC1-203ENST00000403076 CARMIL3Q8ND23 1372 aa22.63■■□□□ 1.21
SDC1-203ENST00000403076 NTSR2O95665 410 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 TM4SF1P30408 202 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 TPTE2Q6XPS3 522 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 SLC16A10Q8TF71 515 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 PDGFDQ9GZP0 370 aaPredicted RBP22.62■■□□□ 1.21
SDC1-203ENST00000403076 PPP4R2Q9NY27 417 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 SYNE4Q8N205 404 aa22.62■■□□□ 1.21
SDC1-203ENST00000403076 IRS4O14654 1257 aaPredicted RBP22.61■■□□□ 1.21
SDC1-203ENST00000403076 CASP7P55210 303 aa22.61■■□□□ 1.21
SDC1-203ENST00000403076 NUTM1Q86Y26 1132 aa22.61■■□□□ 1.21
SDC1-203ENST00000403076 PCDHB15Q9Y5E8 787 aa22.61■■□□□ 1.21
SDC1-203ENST00000403076 PSDA5PKW4 1024 aaPredicted RBP22.6■■□□□ 1.21
SDC1-203ENST00000403076 SERPINB2P05120 415 aa22.6■■□□□ 1.21
SDC1-203ENST00000403076 HSP90B1P14625 803 aaKnown RBP22.6■■□□□ 1.21
SDC1-203ENST00000403076 CDHR2Q9BYE9 1310 aa22.6■■□□□ 1.21
SDC1-203ENST00000403076 PARP3Q9Y6F1 533 aa22.6■■□□□ 1.21
SDC1-203ENST00000403076 MMP10P09238 476 aa22.59■■□□□ 1.21
SDC1-203ENST00000403076 CCDC136Q96JN2 1154 aa22.59■■□□□ 1.21
SDC1-203ENST00000403076 DDR1Q08345 913 aa22.58■■□□□ 1.21
SDC1-203ENST00000403076 ERFEQ4G0M1 354 aa22.58■■□□□ 1.21
SDC1-203ENST00000403076 RPAP2Q8IXW5 612 aaPredicted RBP22.58■■□□□ 1.21
SDC1-203ENST00000403076 CNBD1Q8NA66 436 aa22.58■■□□□ 1.21
SDC1-203ENST00000403076 BICC1Q9H694 974 aaKnown RBP22.58■■□□□ 1.21
SDC1-203ENST00000403076 POLRMTO00411 1230 aaKnown RBP22.57■■□□□ 1.2
SDC1-203ENST00000403076 HCLS1P14317 486 aaPredicted RBP22.57■■□□□ 1.2
SDC1-203ENST00000403076 CEP85Q6P2H3 762 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 EPHA10Q5JZY3 1008 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 CCDC24Q8N4L8 307 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 ANKRD44Q8N8A2 993 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 KAZALD1Q96I82 304 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 CHMP3Q9Y3E7 222 aa22.57■■□□□ 1.2
SDC1-203ENST00000403076 PDE8AO60658 829 aa22.56■■□□□ 1.2
SDC1-203ENST00000403076 ZBTB7AO95365 584 aa22.56■■□□□ 1.2
SDC1-203ENST00000403076 ATP8B2P98198 1209 aa22.56■■□□□ 1.2
SDC1-203ENST00000403076 PLA2G12BQ9BX93 195 aa22.56■■□□□ 1.2
SDC1-203ENST00000403076 HMMRO75330 724 aa22.55■■□□□ 1.2
SDC1-203ENST00000403076 ST5P78524 1137 aa22.55■■□□□ 1.2
SDC1-203ENST00000403076 LMBR1LQ6UX01 489 aa22.55■■□□□ 1.2
SDC1-203ENST00000403076 RWDD1Q9H446 243 aaPredicted RBP22.55■■□□□ 1.2
SDC1-203ENST00000403076 FOXO4P98177 505 aa22.54■■□□□ 1.2
SDC1-203ENST00000403076 B4GALNT3Q6L9W6 998 aa22.54■■□□□ 1.2
SDC1-203ENST00000403076 PRR5LQ6MZQ0 368 aa22.54■■□□□ 1.2
SDC1-203ENST00000403076 COL24A1Q17RW2 1714 aa22.54■■□□□ 1.2
SDC1-203ENST00000403076 SRGAP3O43295 1099 aa22.53■■□□□ 1.2
SDC1-203ENST00000403076 SLC10A5Q5PT55 438 aa22.53■■□□□ 1.2
SDC1-203ENST00000403076 ATF5Q9Y2D1 282 aaPredicted RBP22.53■■□□□ 1.2
SDC1-203ENST00000403076 CTSWP56202 376 aa22.52■■□□□ 1.2
SDC1-203ENST00000403076 MTFR1LQ9H019 292 aa22.52■■□□□ 1.2
SDC1-203ENST00000403076 PNMA6EA0A0J9YXQ4 647 aa22.52■■□□□ 1.19
SDC1-203ENST00000403076 SIRT2Q8IXJ6 389 aa22.52■■□□□ 1.19
SDC1-203ENST00000403076 NLRP3Q96P20 1036 aa22.52■■□□□ 1.19
SDC1-203ENST00000403076 CCDC85AQ96PX6 553 aaPredicted RBP22.52■■□□□ 1.19
SDC1-203ENST00000403076 MTX1Q13505 466 aa22.51■■□□□ 1.19
SDC1-203ENST00000403076 RABL6Q3YEC7 729 aaPredicted RBP22.51■■□□□ 1.19
SDC1-203ENST00000403076 ABCC12Q96J65 1359 aa22.51■■□□□ 1.19
SDC1-203ENST00000403076 POLD1P28340 1107 aa22.5■■□□□ 1.19
SDC1-203ENST00000403076 TTLL11Q8NHH1 800 aa22.5■■□□□ 1.19
SDC1-203ENST00000403076 CSF1RP07333 972 aa22.49■■□□□ 1.19
SDC1-203ENST00000403076 HDAC1Q13547 482 aaPredicted RBP22.49■■□□□ 1.19
SDC1-203ENST00000403076 IGHDP01880 384 aa22.48■■□□□ 1.19
SDC1-203ENST00000403076 CCDC152Q4G0S7 254 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms