RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 NEXMIFQ5QGS0 1516 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 PPFIA3O75145 1194 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 ADCY5O95622 1261 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 ZSCAN25Q6NSZ9 544 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 SNX14Q9Y5W7 946 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 ADGRB1O14514 1584 aa21.83■■□□□ 1.08
USP48-204ENST00000400301 SMC2O95347 1197 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 BRF1Q92994 677 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 LRRC2Q9BYS8 371 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 RBSNQ9H1K0 784 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 STK11IPQ8N1F8 1099 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 CAMSAP1Q5T5Y3 1602 aa21.82■■□□□ 1.08
USP48-204ENST00000400301 RAD50Q92878 1312 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 TULP1O00294 542 aaPredicted RBP21.81■■□□□ 1.08
USP48-204ENST00000400301 KLHDC4Q8TBB5 520 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 IFIT5Q13325 482 aaKnown RBP21.81■■□□□ 1.08
USP48-204ENST00000400301 MPHOSPH8Q99549 860 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 CCDC171Q6TFL3 1326 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 ARHGEF40Q8TER5 1519 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 CADPS2Q86UW7 1296 aa21.81■■□□□ 1.08
USP48-204ENST00000400301 IBTKQ9P2D0 1353 aaPredicted RBP21.81■■□□□ 1.08
USP48-204ENST00000400301 ZNF790Q6PG37 636 aa21.8■■□□□ 1.08
USP48-204ENST00000400301 OSBPL3Q9H4L5 887 aa21.8■■□□□ 1.08
USP48-204ENST00000400301 PES1O00541 588 aaKnown RBP21.8■■□□□ 1.08
USP48-204ENST00000400301 VPS53Q5VIR6 699 aa21.8■■□□□ 1.08
USP48-204ENST00000400301 HSPA4P34932 840 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 OLFM4Q6UX06 510 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 MTERF4Q7Z6M4 381 aaKnown RBP21.79■■□□□ 1.08
USP48-204ENST00000400301 GAS2L3Q86XJ1 694 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 C19orf44Q9H6X5 657 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 DTNBO60941 627 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 VWDEQ8N2E2 1590 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 FILIP1Q7Z7B0 1213 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 JMYQ8N9B5 988 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 CPSF1Q10570 1443 aaKnown RBP21.79■■□□□ 1.08
USP48-204ENST00000400301 ZNF445P59923 1031 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 CEP57L1Q8IYX8 460 aa21.79■■□□□ 1.08
USP48-204ENST00000400301 DDX19AQ9NUU7 478 aaKnown RBP21.79■■□□□ 1.08
USP48-204ENST00000400301 UVSSAQ2YD98 709 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 SUCLG2Q96I99 432 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 GPTP24298 496 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 MCM5P33992 734 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 UNC5CLQ8IV45 518 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 CHAMP1Q96JM3 812 aa21.78■■□□□ 1.08
USP48-204ENST00000400301 NLRP1Q9C000 1473 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 DIP2CQ9Y2E4 1556 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 RRP9O43818 475 aaKnown RBP21.77■■□□□ 1.08
USP48-204ENST00000400301 RUFY3Q7L099 469 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 FSD2A1L4K1 749 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 HAND2P61296 217 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 TFCP2Q12800 502 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 FAM227BQ96M60 508 aa21.77■■□□□ 1.08
USP48-204ENST00000400301 MCMDC2Q4G0Z9 681 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 BEND3Q5T5X7 828 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 BRD1O95696 1058 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 NPHP3Q7Z494 1330 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 NACAP1Q9BZK3 213 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 GIGYF1O75420 1035 aaPredicted RBP21.76■■□□□ 1.07
USP48-204ENST00000400301 C8orf76Q96K31 380 aa21.76■■□□□ 1.07
USP48-204ENST00000400301 CCAR2Q8N163 923 aaKnown RBP21.75■■□□□ 1.07
USP48-204ENST00000400301 DCAF5Q96JK2 942 aa21.75■■□□□ 1.07
USP48-204ENST00000400301 ZCRB1Q8TBF4 217 aaKnown RBP21.75■■□□□ 1.07
USP48-204ENST00000400301 AIDAQ96BJ3 306 aa21.75■■□□□ 1.07
USP48-204ENST00000400301 STAP2Q9UGK3 403 aa21.75■■□□□ 1.07
USP48-204ENST00000400301 ZNF830Q96NB3 372 aaPredicted RBP21.75■■□□□ 1.07
USP48-204ENST00000400301 ZKSCAN5Q9Y2L8 839 aa21.75■■□□□ 1.07
USP48-204ENST00000400301 XBP1P17861 261 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 Q6ZUG5 572 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 TMEM63CQ9P1W3 806 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 CDKL5O76039 1030 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 TRIM22Q8IYM9 498 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 DEPDC5O75140 1603 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 CCDC69A6NI79 296 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 ZNF213O14771 459 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 LDHAL6AQ6ZMR3 332 aa21.74■■□□□ 1.07
USP48-204ENST00000400301 TPM1P09493 284 aa21.73■■□□□ 1.07
USP48-204ENST00000400301 TRMT112Q9UI30 125 aaKnown RBP21.73■■□□□ 1.07
USP48-204ENST00000400301 TDO2P48775 406 aa21.73■■□□□ 1.07
USP48-204ENST00000400301 DACT1Q9NYF0 836 aa21.73■■□□□ 1.07
USP48-204ENST00000400301 GOLGA8BA8MQT2 603 aa21.72■■□□□ 1.07
USP48-204ENST00000400301 IL15P40933 162 aaPredicted RBP21.72■■□□□ 1.07
USP48-204ENST00000400301 ZNF165P49910 485 aa21.72■■□□□ 1.07
USP48-204ENST00000400301 NUP133Q8WUM0 1156 aa21.72■■□□□ 1.07
USP48-204ENST00000400301 METTL22Q9BUU2 404 aaPredicted RBP21.72■■□□□ 1.07
USP48-204ENST00000400301 PDILTQ8N807 584 aa21.72■■□□□ 1.07
USP48-204ENST00000400301 GADD45BO75293 160 aaPredicted RBP21.71■■□□□ 1.07
USP48-204ENST00000400301 ZNF496Q96IT1 587 aaPredicted RBP21.71■■□□□ 1.07
USP48-204ENST00000400301 RAB11FIP4Q86YS3 637 aa21.71■■□□□ 1.07
USP48-204ENST00000400301 AMOTL1Q8IY63 956 aa21.71■■□□□ 1.07
USP48-204ENST00000400301 FSIP1Q8NA03 581 aa21.71■■□□□ 1.07
USP48-204ENST00000400301 NOL10Q9BSC4 688 aaKnown RBP21.71■■□□□ 1.07
USP48-204ENST00000400301 MROH2AA6NES4 1674 aa21.71■■□□□ 1.07
USP48-204ENST00000400301 EPB41L2O43491 1005 aaKnown RBP21.71■■□□□ 1.07
USP48-204ENST00000400301 HS1BP3Q53T59 392 aa21.71■■□□□ 1.07
USP48-204ENST00000400301 PIK3C2BO00750 1634 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 SLC27A2O14975 620 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 NEURL4Q96JN8 1562 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 ZSCAN16Q9H4T2 348 aaPredicted RBP21.7■■□□□ 1.06
USP48-204ENST00000400301 PAG1Q9NWQ8 432 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 USP16Q9Y5T5 823 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms