RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 SOGA3Q5TF21 947 aa11.67□□□□□ -0.54
HMGB1P39-201ENST00000366304 PNMA8AQ86V59 439 aaPredicted RBP11.67□□□□□ -0.54
HMGB1P39-201ENST00000366304 KLRG2A4D1S0 409 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 MAP3K13O43283 966 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 EPS15P42566 896 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 PIP4K2AP48426 406 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 MTHFSDQ2M296 383 aaKnown RBP11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 PAXIP1Q6ZW49 1069 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 SYNE4Q8N205 404 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 DCBLD2Q96PD2 775 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 ZIC5Q96T25 663 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 SETDB2Q96T68 719 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 ZNF330Q9Y3S2 320 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 TLL2Q9Y6L7 1015 aa11.66□□□□□ -0.54
HMGB1P39-201ENST00000366304 STARD3NLO95772 234 aa11.65□□□□□ -0.54
HMGB1P39-201ENST00000366304 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
HMGB1P39-201ENST00000366304 SCNN1DP51172 638 aa11.65□□□□□ -0.54
HMGB1P39-201ENST00000366304 GPC2Q8N158 579 aa11.65□□□□□ -0.54
HMGB1P39-201ENST00000366304 HMOX1P09601 288 aa11.64□□□□□ -0.55
HMGB1P39-201ENST00000366304 NPR1P16066 1061 aa11.64□□□□□ -0.55
HMGB1P39-201ENST00000366304 ST5P78524 1137 aa11.64□□□□□ -0.55
HMGB1P39-201ENST00000366304 DGKZQ13574 1117 aa11.64□□□□□ -0.55
HMGB1P39-201ENST00000366304 HEG1Q9ULI3 1381 aa11.64□□□□□ -0.55
HMGB1P39-201ENST00000366304 KCNQ3O43525 872 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 MAP2K2P36507 400 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 IL6STP40189 918 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 ECE1P42892 770 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 SOX10P56693 466 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 BEGAINQ9BUH8 593 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 PANK3Q9H999 370 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 GJA3Q9Y6H8 435 aa11.63□□□□□ -0.55
HMGB1P39-201ENST00000366304 BCORQ6W2J9 1755 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 CASP8AP2Q9UKL3 1982 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 PRAMEF22A3QJZ6 481 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 PYGBP11216 843 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 GSE1Q14687 1217 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 SAPCD2Q86UD0 394 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 RTKN2Q8IZC4 609 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 IL17REQ8NFR9 667 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 POLR3GLQ9BT43 218 aa11.62□□□□□ -0.55
HMGB1P39-201ENST00000366304 NPHP1O15259 732 aa11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 CIAPIN1Q6FI81 312 aa11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 ZNF790Q6PG37 636 aa11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 DLK2Q6UY11 383 aa11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 MORC1Q86VD1 984 aa11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 NBPF5PQ86XG9 351 aaPredicted RBP11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 DZIP3Q86Y13 1208 aaKnown RBP11.61□□□□□ -0.55
HMGB1P39-201ENST00000366304 BRPF1P55201 1214 aaPredicted RBP11.6□□□□□ -0.55
HMGB1P39-201ENST00000366304 TTC5Q8N0Z6 440 aa11.6□□□□□ -0.55
HMGB1P39-201ENST00000366304 PSMD1Q99460 953 aa11.6□□□□□ -0.55
HMGB1P39-201ENST00000366304 CIZ1Q9ULV3 898 aaPredicted RBP11.6□□□□□ -0.55
HMGB1P39-201ENST00000366304 PCDHB13Q9Y5F0 798 aa11.6□□□□□ -0.55
HMGB1P39-201ENST00000366304 FAM177BA6PVY3 158 aa11.59□□□□□ -0.55
HMGB1P39-201ENST00000366304 CELF2O95319 508 aaKnown RBP11.59□□□□□ -0.55
HMGB1P39-201ENST00000366304 GLIS2Q9BZE0 524 aaPredicted RBP11.59□□□□□ -0.55
HMGB1P39-201ENST00000366304 USP16Q9Y5T5 823 aa11.59□□□□□ -0.55
HMGB1P39-201ENST00000366304 ABCC12Q96J65 1359 aa11.58□□□□□ -0.56
HMGB1P39-201ENST00000366304 NBPF26B4DH59 902 aa11.58□□□□□ -0.56
HMGB1P39-201ENST00000366304 NBPF10Q6P3W6 841 aaKnown RBP11.58□□□□□ -0.56
HMGB1P39-201ENST00000366304 USP50Q70EL3 339 aaPredicted RBP11.58□□□□□ -0.56
HMGB1P39-201ENST00000366304 NBPF15Q8N660 670 aa11.58□□□□□ -0.56
HMGB1P39-201ENST00000366304 TRPM7Q96QT4 1865 aa11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 SIPA1L3O60292 1781 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 CA12O43570 354 aa11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 LMOD1P29536 600 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 HIRAP54198 1017 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 EIF6P56537 245 aaKnown RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 HLFQ16534 295 aa11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 PRPF38BQ5VTL8 546 aaKnown RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 JDP2Q8WYK2 163 aa11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 TEX13AQ9BXU3 409 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P39-201ENST00000366304 SHTN1A0MZ66 631 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 CRY2Q49AN0 593 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 CLEC4GQ6UXB4 293 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 FMNL2Q96PY5 1086 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 GPRC5DQ9NZD1 345 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 TRPC6Q9Y210 931 aa11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 NIP7Q9Y221 180 aaKnown RBP eCLIP11.56□□□□□ -0.56
HMGB1P39-201ENST00000366304 FAM155AB1AL88 458 aaPredicted RBP11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 TPTE2Q6XPS3 522 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 C3orf67Q6ZVT6 689 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 NUTM1Q86Y26 1132 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 LARGE2Q8N3Y3 721 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 HHIPL1Q96JK4 782 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 PGAP2Q9UHJ9 254 aa11.55□□□□□ -0.56
HMGB1P39-201ENST00000366304 ALDH1B1P30837 517 aa11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 IFNL1Q8IU54 200 aa11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 TRPM4Q8TD43 1214 aa11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 ZNF408Q9H9D4 720 aa11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 ADARB2Q9NS39 739 aaKnown RBP11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 CEMIPQ8WUJ3 1361 aa11.54□□□□□ -0.56
HMGB1P39-201ENST00000366304 TCERG1O14776 1098 aaKnown RBP11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 GMPSP49915 693 aaPredicted RBP11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 CXCL9Q07325 125 aa11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 TEFQ10587 303 aa11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 AOC3Q16853 763 aa11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 NPC1L1Q9UHC9 1359 aa11.53□□□□□ -0.56
HMGB1P39-201ENST00000366304 GNAT3A8MTJ3 354 aa11.52□□□□□ -0.57
HMGB1P39-201ENST00000366304 HOXA10P31260 410 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms