RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PLSCR1O15162 318 aa23.16■■□□□ 1.3
CLN3-206ENST00000360019 APBA3O96018 575 aa23.16■■□□□ 1.3
CLN3-206ENST00000360019 PDE4AP27815 886 aa23.16■■□□□ 1.3
CLN3-206ENST00000360019 UBN2Q6ZU65 1347 aa23.16■■□□□ 1.3
CLN3-206ENST00000360019 LNPKQ9C0E8 428 aa23.16■■□□□ 1.3
CLN3-206ENST00000360019 RTCBQ9Y3I0 505 aaKnown RBP23.16■■□□□ 1.3
CLN3-206ENST00000360019 EXOC6BQ9Y2D4 811 aa23.15■■□□□ 1.3
CLN3-206ENST00000360019 RABL6Q3YEC7 729 aaPredicted RBP23.15■■□□□ 1.3
CLN3-206ENST00000360019 AK7Q96M32 723 aa23.15■■□□□ 1.3
CLN3-206ENST00000360019 PCCAP05165 728 aaPredicted RBP23.14■■□□□ 1.29
CLN3-206ENST00000360019 SCN7AQ01118 1682 aa23.14■■□□□ 1.29
CLN3-206ENST00000360019 ILDR1Q86SU0 546 aaPredicted RBP23.13■■□□□ 1.29
CLN3-206ENST00000360019 ZBTB38Q8NAP3 1195 aaPredicted RBP23.13■■□□□ 1.29
CLN3-206ENST00000360019 FOXO4P98177 505 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 FAM89AQ96GI7 184 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 APBB1O00213 710 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 CLEC4GQ6UXB4 293 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 NARFQ9UHQ1 456 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 ZNF652Q9Y2D9 606 aa23.12■■□□□ 1.29
CLN3-206ENST00000360019 ARHGEF1Q92888 912 aaKnown RBP23.11■■□□□ 1.29
CLN3-206ENST00000360019 BCL2L12Q9HB09 334 aa23.11■■□□□ 1.29
CLN3-206ENST00000360019 RGL2O15211 777 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 SURF6O75683 361 aaKnown RBP23.1■■□□□ 1.29
CLN3-206ENST00000360019 SYNE4Q8N205 404 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 SRP68Q9UHB9 627 aaKnown RBP23.1■■□□□ 1.29
CLN3-206ENST00000360019 UBR3Q6ZT12 1888 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 C4AP0C0L4 1744 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 SMARCA5O60264 1052 aaPredicted RBP23.1■■□□□ 1.29
CLN3-206ENST00000360019 PHF14O94880 888 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 USPL1Q5W0Q7 1092 aa23.1■■□□□ 1.29
CLN3-206ENST00000360019 NIP7Q9Y221 180 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLN3-206ENST00000360019 SUSD4Q5VX71 490 aa23.09■■□□□ 1.29
CLN3-206ENST00000360019 LMBR1LQ6UX01 489 aa23.09■■□□□ 1.29
CLN3-206ENST00000360019 TRMT112Q9UI30 125 aaKnown RBP23.09■■□□□ 1.29
CLN3-206ENST00000360019 PA2G4Q9UQ80 394 aaKnown RBP23.09■■□□□ 1.29
CLN3-206ENST00000360019 NOP58Q9Y2X3 529 aaKnown RBP23.09■■□□□ 1.29
CLN3-206ENST00000360019 CDHR2Q9BYE9 1310 aa23.09■■□□□ 1.29
CLN3-206ENST00000360019 TRAPPC3LQ5T215 181 aa23.08■■□□□ 1.29
CLN3-206ENST00000360019 PARP10Q53GL7 1025 aa23.08■■□□□ 1.28
CLN3-206ENST00000360019 PLA2G12BQ9BX93 195 aa23.08■■□□□ 1.28
CLN3-206ENST00000360019 RGPD3A6NKT7 1758 aaPredicted RBP23.07■■□□□ 1.28
CLN3-206ENST00000360019 RGPD4Q7Z3J3 1758 aa23.07■■□□□ 1.28
CLN3-206ENST00000360019 USP42Q9H9J4 1324 aaKnown RBP23.07■■□□□ 1.28
CLN3-206ENST00000360019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.07■■□□□ 1.28
CLN3-206ENST00000360019 ZPR1O75312 459 aa23.07■■□□□ 1.28
CLN3-206ENST00000360019 RFX5P48382 616 aaPredicted RBP23.07■■□□□ 1.28
CLN3-206ENST00000360019 ADRA2BP18089 450 aa23.06■■□□□ 1.28
CLN3-206ENST00000360019 LRRCC1Q9C099 1032 aa23.06■■□□□ 1.28
CLN3-206ENST00000360019 RFC4P35249 363 aa23.05■■□□□ 1.28
CLN3-206ENST00000360019 C16orf71Q8IYS4 520 aaPredicted RBP23.05■■□□□ 1.28
CLN3-206ENST00000360019 FAM177BA6PVY3 158 aa23.05■■□□□ 1.28
CLN3-206ENST00000360019 RAB11FIP3O75154 756 aa23.05■■□□□ 1.28
CLN3-206ENST00000360019 TBC1D9BQ66K14 1250 aa23.05■■□□□ 1.28
CLN3-206ENST00000360019 KLHDC4Q8TBB5 520 aa23.05■■□□□ 1.28
CLN3-206ENST00000360019 UTP14AQ9BVJ6 771 aaKnown RBP23.05■■□□□ 1.28
CLN3-206ENST00000360019 ZBTB47Q9UFB7 747 aaPredicted RBP23.05■■□□□ 1.28
CLN3-206ENST00000360019 IRS4O14654 1257 aaPredicted RBP23.04■■□□□ 1.28
CLN3-206ENST00000360019 NTSR2O95665 410 aa23.04■■□□□ 1.28
CLN3-206ENST00000360019 HMGB2P26583 209 aaKnown RBP23.04■■□□□ 1.28
CLN3-206ENST00000360019 SSFA2P28290 1259 aa23.04■■□□□ 1.28
CLN3-206ENST00000360019 PTPN12Q05209 780 aaKnown RBP23.03■■□□□ 1.28
CLN3-206ENST00000360019 ZNF827Q17R98 1081 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 HSP90AB4PQ58FF6 505 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 OTUD7AQ8TE49 926 aaPredicted RBP23.03■■□□□ 1.28
CLN3-206ENST00000360019 BCL11AQ9H165 835 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 RHPN1Q8TCX5 695 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 AKT1S1Q96B36 256 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 COPRSQ9NQ92 184 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 CHMP3Q9Y3E7 222 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 SH3TC1Q8TE82 1336 aa23.03■■□□□ 1.28
CLN3-206ENST00000360019 CSF1RP07333 972 aa23.02■■□□□ 1.28
CLN3-206ENST00000360019 BICDL1Q6ZP65 573 aa23.02■■□□□ 1.28
CLN3-206ENST00000360019 KIF1BPQ96EK5 621 aa23.01■■□□□ 1.27
CLN3-206ENST00000360019 SIL1Q9H173 461 aa23.01■■□□□ 1.27
CLN3-206ENST00000360019 OS9Q13438 667 aaPredicted RBP23.01■■□□□ 1.27
CLN3-206ENST00000360019 PLEKHM2Q8IWE5 1019 aa23.01■■□□□ 1.27
CLN3-206ENST00000360019 IL1RAPL2Q9NP60 686 aa23.01■■□□□ 1.27
CLN3-206ENST00000360019 COL24A1Q17RW2 1714 aa23■■□□□ 1.27
CLN3-206ENST00000360019 PDE8AO60658 829 aa23■■□□□ 1.27
CLN3-206ENST00000360019 CTSWP56202 376 aa23■■□□□ 1.27
CLN3-206ENST00000360019 EN1Q05925 392 aaPredicted RBP23■■□□□ 1.27
CLN3-206ENST00000360019 NUTM1Q86Y26 1132 aa23■■□□□ 1.27
CLN3-206ENST00000360019 CAMKK2Q96RR4 588 aa23■■□□□ 1.27
CLN3-206ENST00000360019 TSHZ2Q9NRE2 1034 aa23■■□□□ 1.27
CLN3-206ENST00000360019 FAM161AQ3B820 660 aa22.99■■□□□ 1.27
CLN3-206ENST00000360019 TTLL11Q8NHH1 800 aa22.99■■□□□ 1.27
CLN3-206ENST00000360019 MYH3P11055 1940 aa22.99■■□□□ 1.27
CLN3-206ENST00000360019 SASH1O94885 1247 aa22.98■■□□□ 1.27
CLN3-206ENST00000360019 HCLS1P14317 486 aaPredicted RBP22.98■■□□□ 1.27
CLN3-206ENST00000360019 G3BP1Q13283 466 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-206ENST00000360019 EZH2Q15910 746 aaKnown RBP22.98■■□□□ 1.27
CLN3-206ENST00000360019 ERC1Q8IUD2 1116 aa22.98■■□□□ 1.27
CLN3-206ENST00000360019 CCDC85AQ96PX6 553 aaPredicted RBP22.98■■□□□ 1.27
CLN3-206ENST00000360019 SETDB2Q96T68 719 aa22.98■■□□□ 1.27
CLN3-206ENST00000360019 DDX60Q8IY21 1712 aaKnown RBP22.98■■□□□ 1.27
CLN3-206ENST00000360019 SALL3Q9BXA9 1300 aa22.98■■□□□ 1.27
CLN3-206ENST00000360019 TFCP2L1Q9NZI6 479 aa22.98■■□□□ 1.27
CLN3-206ENST00000360019 GYS1P13807 737 aa22.97■■□□□ 1.27
CLN3-206ENST00000360019 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.97■■□□□ 1.27
CLN3-206ENST00000360019 LAMB2P55268 1798 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms