RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 FKBP4Q02790 459 aaKnown RBP eCLIP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 LARP1Q6PKG0 1096 aaKnown RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 PATL2C9JE40 543 aaKnown RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 CAPN2P17655 700 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 SYT1P21579 422 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 CCDC12Q8WUD4 166 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 GOLGA1Q92805 767 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 NUP88Q99567 741 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 DNAJC25Q9H1X3 360 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 TET3O43151 1660 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 ZNF213O14771 459 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 CCDC57Q2TAC2 916 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 WDR7Q9Y4E6 1490 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 RTL1A6NKG5 1358 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 RHPN1Q8TCX5 695 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 BOLA2Q9H3K6 86 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 BCL2L12Q9HB09 334 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 DBF4Q9UBU7 674 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 A0A1W2PP64 1363 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 LUZP1Q86V48 1076 aa5.53□□□□□ -1.52
CSMD3-203ENST00000343508 A6NNZ2 444 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 BRD1O95696 1058 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 GNG11P61952 73 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 IRX3P78415 501 aaPredicted RBP5.52□□□□□ -1.52
CSMD3-203ENST00000343508 ATP8B2P98198 1209 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 SPA17Q15506 151 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 TUBB8Q3ZCM7 444 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 GPT2Q8TD30 523 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 CDK5RAP3Q96JB5 506 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 LARP6Q9BRS8 491 aaKnown RBP5.52□□□□□ -1.52
CSMD3-203ENST00000343508 EMILIN1Q9Y6C2 1016 aa5.52□□□□□ -1.52
CSMD3-203ENST00000343508 HSP90AB3PQ58FF7 597 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 HYPKQ9NX55 129 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 ELP1O95163 1332 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 GOLGA6L10A0A0M3HER8 536 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 USO1O60763 962 aaKnown RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 KIF6Q6ZMV9 814 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 KRBA2Q6ZNG9 492 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 PPP1R42Q7Z4L9 355 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 AOX1Q06278 1338 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 CCDC175P0C221 793 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 MIS18AQ9NYP9 233 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 DNAI1Q9UI46 699 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 GAS2L3Q86XJ1 694 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 C8orf58Q8NAV2 365 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TRIM35Q9UPQ4 493 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 PTPRTO14522 1441 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 AMOTQ4VCS5 1084 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 AOPEPQ8N6M6 819 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 NAA15Q9BXJ9 866 aaKnown RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TMX4Q9H1E5 349 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 ATP7AQ04656 1500 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TUBB2AQ13885 445 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TUBB2BQ9BVA1 445 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TRIM34Q9BYJ4 488 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 PHAXQ9H814 394 aaKnown RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 YEATS4O95619 227 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 MYL6BP14649 208 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 CKAP4Q07065 602 aaKnown RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 CLEC17AQ6ZS10 378 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 RAD50Q92878 1312 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 RGS12O14924 1447 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 SYCP1Q15431 976 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 CCDC102BQ68D86 513 aa5.52□□□□□ -1.53
CSMD3-203ENST00000343508 TTC31Q49AM3 519 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-203ENST00000343508 HSP90AB2PQ58FF8 381 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 LRRC8AQ8IWT6 810 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 ABCC10Q5T3U5 1492 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 WASLO00401 505 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 MRPS27Q92552 414 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 EIF5P55010 431 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 HDXQ7Z353 690 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 RBM8AQ9Y5S9 174 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 MAPK8IP2Q13387 824 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 POLR3DP05423 398 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 ZRSR2Q15696 482 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 GPATCH11Q8N954 259 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CTCFLQ8NI51 663 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 RBM33Q96EV2 1170 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 TSHZ3Q63HK5 1081 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 SBNO2Q9Y2G9 1366 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CNNM1Q9NRU3 951 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 KIAA1210Q9ULL0 1709 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 IFIT1P09914 478 aaKnown RBP5.51□□□□□ -1.53
CSMD3-203ENST00000343508 PAFAH1B1P43034 410 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 JADE2Q9NQC1 790 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 SYKP43405 635 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 PPM1EQ8WY54 764 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 INCENPQ9NQS7 918 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 POLKQ9UBT6 870 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 MYOM2P54296 1465 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 PPIP5K1Q6PFW1 1433 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CTAGE15A4D2H0 777 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 FAM83GA6ND36 823 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CTAGE8P0CG41 777 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 FKBP15Q5T1M5 1219 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CTAGE6Q86UF2 777 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 CTAGE4Q8IX94 777 aa5.51□□□□□ -1.53
CSMD3-203ENST00000343508 LLPHQ9BRT6 129 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms