RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 EAF2Q96CJ1 260 aaPredicted RBP27.47■■□□□ 1.99
PDLIM2-203ENST00000339162 KIF2CQ99661 725 aa27.47■■□□□ 1.99
PDLIM2-203ENST00000339162 SPATA31A6Q5VVP1 1343 aa27.47■■□□□ 1.99
PDLIM2-203ENST00000339162 MAP3K15Q6ZN16 1313 aa27.47■■□□□ 1.99
PDLIM2-203ENST00000339162 COL15A1P39059 1388 aa27.46■■□□□ 1.99
PDLIM2-203ENST00000339162 CCDC8Q9H0W5 538 aaPredicted RBP27.46■■□□□ 1.99
PDLIM2-203ENST00000339162 COPRSQ9NQ92 184 aa27.46■■□□□ 1.99
PDLIM2-203ENST00000339162 TUBGCP6Q96RT7 1819 aa27.46■■□□□ 1.99
PDLIM2-203ENST00000339162 GPTP24298 496 aa27.45■■□□□ 1.99
PDLIM2-203ENST00000339162 USP26Q9BXU7 913 aa27.45■■□□□ 1.99
PDLIM2-203ENST00000339162 TBC1D2BQ9UPU7 963 aa27.45■■□□□ 1.99
PDLIM2-203ENST00000339162 TJP1Q07157 1748 aa27.45■■□□□ 1.98
PDLIM2-203ENST00000339162 LOC102724428A0A0B4J2F2 783 aa27.45■■□□□ 1.98
PDLIM2-203ENST00000339162 SIK1P57059 783 aa27.45■■□□□ 1.98
PDLIM2-203ENST00000339162 NBR1Q14596 966 aa27.45■■□□□ 1.98
PDLIM2-203ENST00000339162 TLR7Q9NYK1 1049 aaKnown RBP27.44■■□□□ 1.98
PDLIM2-203ENST00000339162 GIGYF2Q6Y7W6 1299 aaKnown RBP27.44■■□□□ 1.98
PDLIM2-203ENST00000339162 ERC2O15083 957 aa27.43■■□□□ 1.98
PDLIM2-203ENST00000339162 CHMLP26374 656 aa27.43■■□□□ 1.98
PDLIM2-203ENST00000339162 MEX3CQ5U5Q3 659 aaKnown RBP27.43■■□□□ 1.98
PDLIM2-203ENST00000339162 FAM89AQ96GI7 184 aa27.43■■□□□ 1.98
PDLIM2-203ENST00000339162 ITPK1Q13572 414 aa27.43■■□□□ 1.98
PDLIM2-203ENST00000339162 FAM182BQ5T319 152 aa27.42■■□□□ 1.98
PDLIM2-203ENST00000339162 ECHDC1Q9NTX5 307 aa27.42■■□□□ 1.98
PDLIM2-203ENST00000339162 PALLDQ8WX93 1383 aa27.42■■□□□ 1.98
PDLIM2-203ENST00000339162 TTC41PQ6P2S7 1318 aa27.42■■□□□ 1.98
PDLIM2-203ENST00000339162 USP42Q9H9J4 1324 aaKnown RBP27.42■■□□□ 1.98
PDLIM2-203ENST00000339162 PTF1AQ7RTS3 328 aa27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 SYNE4Q8N205 404 aa27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 SPRYD3Q8NCJ5 442 aa27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 IL6STP40189 918 aaPredicted RBP27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 INTS5Q6P9B9 1019 aaKnown RBP27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 DZIP3Q86Y13 1208 aaKnown RBP27.41■■□□□ 1.98
PDLIM2-203ENST00000339162 CRKLP46109 303 aaKnown RBP27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 TFCP2Q12800 502 aa27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 ESYT1Q9BSJ8 1104 aa27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 GLRX3O76003 335 aaKnown RBP27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 TRIM28Q13263 835 aaKnown RBP27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 SLKQ9H2G2 1235 aaPredicted RBP27.4■■□□□ 1.98
PDLIM2-203ENST00000339162 REC8O95072 547 aa27.39■■□□□ 1.98
PDLIM2-203ENST00000339162 CCDC85AQ96PX6 553 aaPredicted RBP27.39■■□□□ 1.98
PDLIM2-203ENST00000339162 GPATCH3Q96I76 525 aa27.39■■□□□ 1.97
PDLIM2-203ENST00000339162 ZNF594Q96JF6 807 aaPredicted RBP27.39■■□□□ 1.97
PDLIM2-203ENST00000339162 CCDC87Q9NVE4 849 aa27.39■■□□□ 1.97
PDLIM2-203ENST00000339162 EIF5BO60841 1220 aaKnown RBP27.38■■□□□ 1.97
PDLIM2-203ENST00000339162 KCNQ4P56696 695 aa27.38■■□□□ 1.97
PDLIM2-203ENST00000339162 IL25Q9H293 177 aa27.38■■□□□ 1.97
PDLIM2-203ENST00000339162 CNTROBQ8N137 903 aa27.37■■□□□ 1.97
PDLIM2-203ENST00000339162 NLRP10Q86W26 655 aa27.37■■□□□ 1.97
PDLIM2-203ENST00000339162 EIF5P55010 431 aaKnown RBP27.36■■□□□ 1.97
PDLIM2-203ENST00000339162 PCCAP05165 728 aaPredicted RBP27.36■■□□□ 1.97
PDLIM2-203ENST00000339162 ZBTB38Q8NAP3 1195 aaPredicted RBP27.36■■□□□ 1.97
PDLIM2-203ENST00000339162 CD2BP2O95400 341 aaKnown RBP27.35■■□□□ 1.97
PDLIM2-203ENST00000339162 HSCBQ8IWL3 235 aa27.35■■□□□ 1.97
PDLIM2-203ENST00000339162 TNNI3KQ59H18 835 aa27.34■■□□□ 1.97
PDLIM2-203ENST00000339162 ANO2Q9NQ90 1003 aa27.34■■□□□ 1.97
PDLIM2-203ENST00000339162 FPGT-TNNI3KV9GXZ4 949 aa27.34■■□□□ 1.97
PDLIM2-203ENST00000339162 AFF2P51816 1311 aa27.34■■□□□ 1.97
PDLIM2-203ENST00000339162 HSP90AB3PQ58FF7 597 aa27.33■■□□□ 1.97
PDLIM2-203ENST00000339162 SMARCC1Q92922 1105 aaPredicted RBP27.33■■□□□ 1.97
PDLIM2-203ENST00000339162 LRRC24Q50LG9 513 aa27.33■■□□□ 1.97
PDLIM2-203ENST00000339162 ATG9AQ7Z3C6 839 aa27.33■■□□□ 1.97
PDLIM2-203ENST00000339162 BOLA2Q9H3K6 86 aa27.33■■□□□ 1.97
PDLIM2-203ENST00000339162 DBNLQ9UJU6 430 aaKnown RBP27.32■■□□□ 1.96
PDLIM2-203ENST00000339162 ERVV-1B6SEH8 477 aa27.32■■□□□ 1.96
PDLIM2-203ENST00000339162 GJD4Q96KN9 370 aaPredicted RBP27.32■■□□□ 1.96
PDLIM2-203ENST00000339162 PUS3Q9BZE2 481 aaKnown RBP27.32■■□□□ 1.96
PDLIM2-203ENST00000339162 UBN2Q6ZU65 1347 aa27.31■■□□□ 1.96
PDLIM2-203ENST00000339162 TRMT112Q9UI30 125 aaKnown RBP27.31■■□□□ 1.96
PDLIM2-203ENST00000339162 AK9Q5TCS8 1911 aa27.31■■□□□ 1.96
PDLIM2-203ENST00000339162 CWC27Q6UX04 472 aaKnown RBP27.3■■□□□ 1.96
PDLIM2-203ENST00000339162 SNX21Q969T3 373 aa27.3■■□□□ 1.96
PDLIM2-203ENST00000339162 MYH14Q7Z406 1995 aaKnown RBP27.29■■□□□ 1.96
PDLIM2-203ENST00000339162 CCDC57Q2TAC2 916 aa27.29■■□□□ 1.96
PDLIM2-203ENST00000339162 FAM177BA6PVY3 158 aa27.29■■□□□ 1.96
PDLIM2-203ENST00000339162 DBNDD2Q9BQY9 259 aa27.29■■□□□ 1.96
PDLIM2-203ENST00000339162 NUP98P52948 1817 aa27.29■■□□□ 1.96
PDLIM2-203ENST00000339162 EYA2O00167 538 aa27.28■■□□□ 1.96
PDLIM2-203ENST00000339162 ZNF34Q8IZ26 560 aa27.28■■□□□ 1.96
PDLIM2-203ENST00000339162 LINC00116Q8NCU8 138 aa27.28■■□□□ 1.96
PDLIM2-203ENST00000339162 PLA2G12BQ9BX93 195 aa27.27■■□□□ 1.96
PDLIM2-203ENST00000339162 IRS4O14654 1257 aaPredicted RBP27.26■■□□□ 1.96
PDLIM2-203ENST00000339162 EVI5LQ96CN4 794 aa27.26■■□□□ 1.96
PDLIM2-203ENST00000339162 NDUFB9Q9Y6M9 179 aa27.26■■□□□ 1.96
PDLIM2-203ENST00000339162 IL15P40933 162 aaPredicted RBP27.26■■□□□ 1.95
PDLIM2-203ENST00000339162 TIMM10P62072 90 aa27.26■■□□□ 1.95
PDLIM2-203ENST00000339162 SMIM5Q71RC9 77 aa27.26■■□□□ 1.95
PDLIM2-203ENST00000339162 EDC3Q96F86 508 aaKnown RBP27.26■■□□□ 1.95
PDLIM2-203ENST00000339162 NEUROD6Q96NK8 337 aa27.26■■□□□ 1.95
PDLIM2-203ENST00000339162 SGSM2O43147 1006 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 CAMTA2O94983 1202 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 CSF1RP07333 972 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 ANTXR1Q9H6X2 564 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 CDHR2Q9BYE9 1310 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 THSD7AQ9UPZ6 1657 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 RABEP1Q15276 862 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 DIAPH3Q9NSV4 1193 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 PALD1Q9ULE6 856 aa27.25■■□□□ 1.95
PDLIM2-203ENST00000339162 TTLL11Q8NHH1 800 aa27.24■■□□□ 1.95
PDLIM2-203ENST00000339162 GREM2Q9H772 168 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms