RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PCCAP05165 728 aaPredicted RBP19.08■□□□□ 0.65
LIMS1-202ENST00000338045 RFX5P48382 616 aaPredicted RBP19.08■□□□□ 0.65
LIMS1-202ENST00000338045 LINC00116Q8NCU8 138 aa19.08■□□□□ 0.65
LIMS1-202ENST00000338045 TBC1D2BQ9UPU7 963 aa19.08■□□□□ 0.65
LIMS1-202ENST00000338045 CNTNAP4Q9C0A0 1308 aa19.08■□□□□ 0.65
LIMS1-202ENST00000338045 NUP98P52948 1817 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 ARXQ96QS3 562 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 IL1RAPL2Q9NP60 686 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 COPRSQ9NQ92 184 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 MX1P20591 662 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 ANP32AP39687 249 aaKnown RBP19.07■□□□□ 0.64
LIMS1-202ENST00000338045 ZNF772Q68DY9 489 aaPredicted RBP19.07■□□□□ 0.64
LIMS1-202ENST00000338045 NLRP10Q86W26 655 aa19.07■□□□□ 0.64
LIMS1-202ENST00000338045 ZBTB38Q8NAP3 1195 aaPredicted RBP19.07■□□□□ 0.64
LIMS1-202ENST00000338045 AOX1Q06278 1338 aa19.06■□□□□ 0.64
LIMS1-202ENST00000338045 PLA2G12BQ9BX93 195 aa19.06■□□□□ 0.64
LIMS1-202ENST00000338045 LY75O60449 1722 aa19.06■□□□□ 0.64
LIMS1-202ENST00000338045 CAMTA2O94983 1202 aa19.05■□□□□ 0.64
LIMS1-202ENST00000338045 PTPN12Q05209 780 aaKnown RBP19.05■□□□□ 0.64
LIMS1-202ENST00000338045 RC3H1Q5TC82 1133 aaKnown RBP19.05■□□□□ 0.64
LIMS1-202ENST00000338045 LMBR1LQ6UX01 489 aa19.05■□□□□ 0.64
LIMS1-202ENST00000338045 ZNF34Q8IZ26 560 aa19.05■□□□□ 0.64
LIMS1-202ENST00000338045 ANP32EQ9BTT0 268 aa19.05■□□□□ 0.64
LIMS1-202ENST00000338045 BCL11BQ9C0K0 894 aaPredicted RBP19.05■□□□□ 0.64
LIMS1-202ENST00000338045 CDHR2Q9BYE9 1310 aa19.05■□□□□ 0.64
LIMS1-202ENST00000338045 G3BP1Q13283 466 aaKnown RBP eCLIP19.05■□□□□ 0.64
LIMS1-202ENST00000338045 OS9Q13438 667 aaPredicted RBP19.05■□□□□ 0.64
LIMS1-202ENST00000338045 SASH1O94885 1247 aa19.04■□□□□ 0.64
LIMS1-202ENST00000338045 RTL5Q5HYW3 569 aaPredicted RBP19.04■□□□□ 0.64
LIMS1-202ENST00000338045 BRWD3Q6RI45 1802 aa19.04■□□□□ 0.64
LIMS1-202ENST00000338045 GPTP24298 496 aa19.03■□□□□ 0.64
LIMS1-202ENST00000338045 RBM6P78332 1123 aaKnown RBP19.03■□□□□ 0.64
LIMS1-202ENST00000338045 FAM196AQ6ZSG2 479 aa19.03■□□□□ 0.64
LIMS1-202ENST00000338045 KRT27Q7Z3Y8 459 aa19.03■□□□□ 0.64
LIMS1-202ENST00000338045 USP42Q9H9J4 1324 aaKnown RBP19.03■□□□□ 0.64
LIMS1-202ENST00000338045 SDSP20132 328 aa19.03■□□□□ 0.64
LIMS1-202ENST00000338045 CLASRPQ8N2M8 674 aaKnown RBP19.03■□□□□ 0.64
LIMS1-202ENST00000338045 TUBGCP6Q96RT7 1819 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 UBN2Q6ZU65 1347 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 RGL2O15211 777 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 CDC45O75419 566 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 KCNQ4P56696 695 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 KLHDC4Q8TBB5 520 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 FAM89AQ96GI7 184 aa19.02■□□□□ 0.64
LIMS1-202ENST00000338045 CCNL1Q9UK58 526 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-202ENST00000338045 TBC1D9Q6ZT07 1266 aa19.01■□□□□ 0.63
LIMS1-202ENST00000338045 NUTM1Q86Y26 1132 aa19.01■□□□□ 0.63
LIMS1-202ENST00000338045 BCORQ6W2J9 1755 aa19.01■□□□□ 0.63
LIMS1-202ENST00000338045 SIL1Q9H173 461 aa19.01■□□□□ 0.63
LIMS1-202ENST00000338045 UPF2Q9HAU5 1272 aaKnown RBP19.01■□□□□ 0.63
LIMS1-202ENST00000338045 CSF1RP07333 972 aa19■□□□□ 0.63
LIMS1-202ENST00000338045 TSHZ3Q63HK5 1081 aa19■□□□□ 0.63
LIMS1-202ENST00000338045 TAF1LQ8IZX4 1826 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 RPS6KA4O75676 772 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 CLEC4GQ6UXB4 293 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 PI4K2BQ8TCG2 481 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 TBC1D32Q96NH3 1257 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-202ENST00000338045 TTC41PQ6P2S7 1318 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 PARP10Q53GL7 1025 aa18.99■□□□□ 0.63
LIMS1-202ENST00000338045 TRMT112Q9UI30 125 aaKnown RBP18.99■□□□□ 0.63
LIMS1-202ENST00000338045 SYNE4Q8N205 404 aa18.98■□□□□ 0.63
LIMS1-202ENST00000338045 IPO9Q96P70 1041 aaKnown RBP18.98■□□□□ 0.63
LIMS1-202ENST00000338045 ZNF652Q9Y2D9 606 aa18.98■□□□□ 0.63
LIMS1-202ENST00000338045 EAF2Q96CJ1 260 aaPredicted RBP18.97■□□□□ 0.63
LIMS1-202ENST00000338045 CHMP3Q9Y3E7 222 aa18.97■□□□□ 0.63
LIMS1-202ENST00000338045 MFAP1P55081 439 aaKnown RBP18.97■□□□□ 0.63
LIMS1-202ENST00000338045 SUSD4Q5VX71 490 aa18.97■□□□□ 0.63
LIMS1-202ENST00000338045 AK7Q96M32 723 aa18.97■□□□□ 0.63
LIMS1-202ENST00000338045 SCN7AQ01118 1682 aa18.96■□□□□ 0.63
LIMS1-202ENST00000338045 IRS4O14654 1257 aaPredicted RBP18.96■□□□□ 0.63
LIMS1-202ENST00000338045 CIAO1O76071 339 aa18.96■□□□□ 0.63
LIMS1-202ENST00000338045 IFIT2P09913 472 aaKnown RBP18.96■□□□□ 0.63
LIMS1-202ENST00000338045 ATG9AQ7Z3C6 839 aa18.96■□□□□ 0.63
LIMS1-202ENST00000338045 AACSQ86V21 672 aa18.96■□□□□ 0.63
LIMS1-202ENST00000338045 FBXO3Q9UK99 471 aa18.96■□□□□ 0.63
LIMS1-202ENST00000338045 CTSWP56202 376 aa18.95■□□□□ 0.62
LIMS1-202ENST00000338045 TTLL11Q8NHH1 800 aa18.95■□□□□ 0.62
LIMS1-202ENST00000338045 ECHDC1Q9NTX5 307 aa18.95■□□□□ 0.62
LIMS1-202ENST00000338045 C4BP0C0L5 1744 aa18.95■□□□□ 0.62
LIMS1-202ENST00000338045 EP400Q96L91 3159 aa18.95■□□□□ 0.62
LIMS1-202ENST00000338045 PDE8AO60658 829 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 GLRX3O76003 335 aaKnown RBP18.94■□□□□ 0.62
LIMS1-202ENST00000338045 CCDC57Q2TAC2 916 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 UTP14AQ9BVJ6 771 aaKnown RBP18.94■□□□□ 0.62
LIMS1-202ENST00000338045 NARFQ9UHQ1 456 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 NIP7Q9Y221 180 aaKnown RBP eCLIP18.94■□□□□ 0.62
LIMS1-202ENST00000338045 SH3TC1Q8TE82 1336 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 MYH3P11055 1940 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 EYA2O00167 538 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 GNPATO15228 680 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 IL15P40933 162 aaPredicted RBP18.94■□□□□ 0.62
LIMS1-202ENST00000338045 TFCP2Q12800 502 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 GPATCH3Q96I76 525 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 LRRC4BQ9NT99 713 aa18.94■□□□□ 0.62
LIMS1-202ENST00000338045 RTCBQ9Y3I0 505 aaKnown RBP18.94■□□□□ 0.62
LIMS1-202ENST00000338045 ERC2O15083 957 aa18.93■□□□□ 0.62
LIMS1-202ENST00000338045 NTSR2O95665 410 aa18.93■□□□□ 0.62
LIMS1-202ENST00000338045 C22orf23Q9BZE7 217 aa18.93■□□□□ 0.62
LIMS1-202ENST00000338045 TRIM37O94972 964 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms