RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 CC2D2BQ6DHV5 1058 aa20.25■□□□□ 0.83
CTHRC1-201ENST00000330295 RGMBQ6NW40 437 aa20.25■□□□□ 0.83
CTHRC1-201ENST00000330295 CDC37L1Q7L3B6 337 aa20.25■□□□□ 0.83
CTHRC1-201ENST00000330295 TEX13AQ9BXU3 409 aaPredicted RBP20.25■□□□□ 0.83
CTHRC1-201ENST00000330295 DZIP3Q86Y13 1208 aaKnown RBP20.24■□□□□ 0.83
CTHRC1-201ENST00000330295 NIM1KQ8IY84 436 aa20.24■□□□□ 0.83
CTHRC1-201ENST00000330295 ZC3H15Q8WU90 426 aaKnown RBP20.24■□□□□ 0.83
CTHRC1-201ENST00000330295 HEG1Q9ULI3 1381 aa20.23■□□□□ 0.83
CTHRC1-201ENST00000330295 TPTE2Q6XPS3 522 aa20.23■□□□□ 0.83
CTHRC1-201ENST00000330295 CCDC102AQ96A19 550 aa20.23■□□□□ 0.83
CTHRC1-201ENST00000330295 ZNF496Q96IT1 587 aaPredicted RBP20.23■□□□□ 0.83
CTHRC1-201ENST00000330295 A1BGP04217 495 aa20.22■□□□□ 0.83
CTHRC1-201ENST00000330295 CLEC4GQ6UXB4 293 aa20.22■□□□□ 0.83
CTHRC1-201ENST00000330295 DLL1O00548 723 aa20.2■□□□□ 0.82
CTHRC1-201ENST00000330295 HIRAP54198 1017 aaPredicted RBP20.2■□□□□ 0.82
CTHRC1-201ENST00000330295 GRIPAP1Q4V328 841 aa20.2■□□□□ 0.82
CTHRC1-201ENST00000330295 ZNF652Q9Y2D9 606 aa20.2■□□□□ 0.82
CTHRC1-201ENST00000330295 HOXD11P31277 338 aaPredicted RBP20.19■□□□□ 0.82
CTHRC1-201ENST00000330295 GMPSP49915 693 aaPredicted RBP20.19■□□□□ 0.82
CTHRC1-201ENST00000330295 CSRNP1Q96S65 589 aa20.19■□□□□ 0.82
CTHRC1-201ENST00000330295 NPC1L1Q9UHC9 1359 aa20.19■□□□□ 0.82
CTHRC1-201ENST00000330295 ZNF157P51786 506 aaPredicted RBP20.18■□□□□ 0.82
CTHRC1-201ENST00000330295 USP48Q86UV5 1035 aa20.18■□□□□ 0.82
CTHRC1-201ENST00000330295 CNKSR2Q8WXI2 1034 aa20.18■□□□□ 0.82
CTHRC1-201ENST00000330295 HDAC9Q9UKV0 1011 aa20.18■□□□□ 0.82
CTHRC1-201ENST00000330295 CDHR2Q9BYE9 1310 aa20.18■□□□□ 0.82
CTHRC1-201ENST00000330295 PPIP5K2O43314 1243 aa20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 CXCL9Q07325 125 aa20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 CRY2Q49AN0 593 aa20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 ZNF790Q6PG37 636 aa20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 TRPM4Q8TD43 1214 aa20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 GBA2Q9HCG7 927 aaPredicted RBP20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 NIP7Q9Y221 180 aaKnown RBP eCLIP20.17■□□□□ 0.82
CTHRC1-201ENST00000330295 FAM177BA6PVY3 158 aa20.16■□□□□ 0.82
CTHRC1-201ENST00000330295 DLK2Q6UY11 383 aa20.16■□□□□ 0.82
CTHRC1-201ENST00000330295 SLC10A3P09131 477 aa20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 IL13P35225 146 aa20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 AOC3Q16853 763 aa20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 C2orf69Q8N8R5 385 aa20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 ZNRF3Q9ULT6 936 aa20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 MKI67P46013 3256 aaKnown RBP20.15■□□□□ 0.82
CTHRC1-201ENST00000330295 GTF2E1P29083 439 aaPredicted RBP20.14■□□□□ 0.81
CTHRC1-201ENST00000330295 BCL2L13Q9BXK5 485 aa20.14■□□□□ 0.81
CTHRC1-201ENST00000330295 MTHFSDQ2M296 383 aaKnown RBP20.13■□□□□ 0.81
CTHRC1-201ENST00000330295 FBXO46Q6PJ61 603 aaPredicted RBP20.13■□□□□ 0.81
CTHRC1-201ENST00000330295 SLC51AQ86UW1 340 aa20.13■□□□□ 0.81
CTHRC1-201ENST00000330295 ZNF296Q8WUU4 475 aaPredicted RBP20.13■□□□□ 0.81
CTHRC1-201ENST00000330295 FMNL2Q96PY5 1086 aa20.13■□□□□ 0.81
CTHRC1-201ENST00000330295 PIP4K2AP48426 406 aaPredicted RBP20.12■□□□□ 0.81
CTHRC1-201ENST00000330295 REM2Q8IYK8 340 aaPredicted RBP20.12■□□□□ 0.81
CTHRC1-201ENST00000330295 VPS33BQ9H267 617 aa20.12■□□□□ 0.81
CTHRC1-201ENST00000330295 HOXA10P31260 410 aaPredicted RBP20.11■□□□□ 0.81
CTHRC1-201ENST00000330295 RPGRQ92834 1020 aaKnown RBP20.11■□□□□ 0.81
CTHRC1-201ENST00000330295 ABCC12Q96J65 1359 aa20.1■□□□□ 0.81
CTHRC1-201ENST00000330295 RGL2O15211 777 aa20.1■□□□□ 0.81
CTHRC1-201ENST00000330295 KRT26Q7Z3Y9 468 aa20.1■□□□□ 0.81
CTHRC1-201ENST00000330295 CNOT7Q9UIV1 285 aaKnown RBP20.1■□□□□ 0.81
CTHRC1-201ENST00000330295 SIPA1L3O60292 1781 aaPredicted RBP20.1■□□□□ 0.81
CTHRC1-201ENST00000330295 KIF7Q2M1P5 1343 aa20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 SHTN1A0MZ66 631 aa20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 TCERG1O14776 1098 aaKnown RBP20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 PPEF1O14829 653 aaPredicted RBP20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 TEFQ10587 303 aa20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 SZT2Q5T011 3432 aa20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 RIC1Q4ADV7 1423 aa20.09■□□□□ 0.81
CTHRC1-201ENST00000330295 POLR2AP24928 1970 aaKnown RBP20.08■□□□□ 0.81
CTHRC1-201ENST00000330295 H7C1D1 291 aa20.08■□□□□ 0.81
CTHRC1-201ENST00000330295 HMOX1P09601 288 aa20.08■□□□□ 0.81
CTHRC1-201ENST00000330295 COLQQ9Y215 455 aaPredicted RBP20.08■□□□□ 0.81
CTHRC1-201ENST00000330295 TRIOBPQ9H2D6 2365 aa20.08■□□□□ 0.8
CTHRC1-201ENST00000330295 TNIP1Q15025 636 aa20.07■□□□□ 0.8
CTHRC1-201ENST00000330295 SLC17A8Q8NDX2 589 aa20.07■□□□□ 0.8
CTHRC1-201ENST00000330295 USP16Q9Y5T5 823 aa20.07■□□□□ 0.8
CTHRC1-201ENST00000330295 CUL9Q8IWT3 2517 aa20.07■□□□□ 0.8
CTHRC1-201ENST00000330295 ADM5C9JUS6 153 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 RAD17O75943 681 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 TBC1D8O95759 1140 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 NUTM1Q86Y26 1132 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 RASAL3Q86YV0 1011 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 MICALL2Q8IY33 904 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 CRAMP1Q96RY5 1269 aa20.06■□□□□ 0.8
CTHRC1-201ENST00000330295 POTEFA5A3E0 1075 aa20.05■□□□□ 0.8
CTHRC1-201ENST00000330295 RBM17Q96I25 401 aaKnown RBP20.05■□□□□ 0.8
CTHRC1-201ENST00000330295 NYXQ9GZU5 481 aa20.05■□□□□ 0.8
CTHRC1-201ENST00000330295 HLFQ16534 295 aa20.04■□□□□ 0.8
CTHRC1-201ENST00000330295 NOM1Q5C9Z4 860 aaKnown RBP20.04■□□□□ 0.8
CTHRC1-201ENST00000330295 SUPT20HQ8NEM7 779 aa20.04■□□□□ 0.8
CTHRC1-201ENST00000330295 IL17REQ8NFR9 667 aa20.04■□□□□ 0.8
CTHRC1-201ENST00000330295 TMX4Q9H1E5 349 aaPredicted RBP20.04■□□□□ 0.8
CTHRC1-201ENST00000330295 GPR25O00155 361 aa20.03■□□□□ 0.8
CTHRC1-201ENST00000330295 SAMD7Q7Z3H4 446 aa20.03■□□□□ 0.8
CTHRC1-201ENST00000330295 MORC1Q86VD1 984 aa20.03■□□□□ 0.8
CTHRC1-201ENST00000330295 RTFDC1Q9BY42 306 aaPredicted RBP20.03■□□□□ 0.8
CTHRC1-201ENST00000330295 KIAA0100Q14667 2235 aaKnown RBP20.03■□□□□ 0.8
CTHRC1-201ENST00000330295 KCNQ3O43525 872 aa20.02■□□□□ 0.8
CTHRC1-201ENST00000330295 DCPSQ96C86 337 aaKnown RBP20.02■□□□□ 0.8
CTHRC1-201ENST00000330295 ATP6V0A2Q9Y487 856 aa20.02■□□□□ 0.8
CTHRC1-201ENST00000330295 RBBP6Q7Z6E9 1792 aaKnown RBP20.02■□□□□ 0.8
CTHRC1-201ENST00000330295 KIAA2012Q0VF49 1180 aa20.01■□□□□ 0.79
CTHRC1-201ENST00000330295 RNF216Q9NWF9 866 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms