RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 RBM25P49756 843 aaKnown RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 NBPF7P0C2Y1 421 aaPredicted RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 MPNDQ8N594 471 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 ACSBG1Q96GR2 724 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 C8orf76Q96K31 380 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 A2ML1A8K2U0 1454 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 HAND2P61296 217 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 MADDQ8WXG6 1647 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 E9PCH4 1651 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 R3HCC1Q9Y3T6 440 aaKnown RBP13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 ATP6V1AP38606 617 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 NMIQ13287 307 aaPredicted RBP13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 KLHL40Q2TBA0 621 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 CCDC183Q5T5S1 534 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 TCEANC2Q96MN5 208 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 METTL22Q9BUU2 404 aaPredicted RBP13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 FAM13BQ9NYF5 915 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 TCEAL9Q9UHQ7 104 aa13.4□□□□□ -0.26
PCDHGC3-201ENST00000308177 ZFYP08048 801 aaPredicted RBP13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 GUCY1B3Q02153 619 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 MCMDC2Q4G0Z9 681 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 BTG4Q9NY30 223 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 NOL7Q9UMY1 257 aaKnown RBP13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 GOLGA8BA8MQT2 603 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 TOM1O60784 492 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 UQCRFS1P1P0C7P4 283 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 HMGB2P26583 209 aaKnown RBP13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 ATP2B2Q01814 1243 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 KLHL34Q8N239 644 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 ANKIB1Q9P2G1 1089 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 ZNF496Q96IT1 587 aaPredicted RBP13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 CCDC196A0A1B0GTZ2 297 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 ESPNB1AK53 854 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 CAMK4Q16566 473 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 CCDC152Q4G0S7 254 aa13.39□□□□□ -0.27
PCDHGC3-201ENST00000308177 TFCP2Q12800 502 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 CEP57L1Q8IYX8 460 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 PDILTQ8N807 584 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 NECAB1Q8N987 351 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 BRF1Q92994 677 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 PLBD2Q8NHP8 589 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 RNF41Q9H4P4 317 aaPredicted RBP13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 IFIT3O14879 490 aaKnown RBP13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 KCNQ3O43525 872 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 TFIP11Q9UBB9 837 aaKnown RBP13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 SLC12A7Q9Y666 1083 aa13.38□□□□□ -0.27
PCDHGC3-201ENST00000308177 DZIP3Q86Y13 1208 aaKnown RBP13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 DZIP1Q86YF9 867 aaKnown RBP13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 SLAIN2Q9P270 581 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 ADGRB3O60242 1522 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 BRPF1P55201 1214 aaPredicted RBP13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 SMARCC1Q92922 1105 aaPredicted RBP13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 PAG1Q9NWQ8 432 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 RTL1A6NKG5 1358 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 GIGYF1O75420 1035 aaPredicted RBP13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 NCOA7Q8NI08 942 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 USP44Q9H0E7 712 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 USP16Q9Y5T5 823 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 ZNF853P0CG23 659 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 USP5P45974 858 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 IQCA1Q86XH1 822 aa13.37□□□□□ -0.27
PCDHGC3-201ENST00000308177 LMTK2Q8IWU2 1503 aa13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 RANBP6O60518 1105 aaKnown RBP13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 ZSCAN22P10073 491 aaPredicted RBP13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 SOGA3Q5TF21 947 aa13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 CCDC82Q8N4S0 544 aa13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 GLI2P10070 1586 aa13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 PIBF1Q8WXW3 757 aa13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 NIP7Q9Y221 180 aaKnown RBP eCLIP13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 CDK12Q9NYV4 1490 aaPredicted RBP13.36□□□□□ -0.27
PCDHGC3-201ENST00000308177 RAB3GAP1Q15042 981 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 LRRC2Q9BYS8 371 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 GOLGA8AA7E2F4 631 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 UBAP1LF5GYI3 381 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 SERPINC1P01008 464 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 ARHGEF25Q86VW2 580 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 KLHDC4Q8TBB5 520 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 IRS4O14654 1257 aaPredicted RBP13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 MCM5P33992 734 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 RBM5P52756 815 aaKnown RBP eCLIP13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 AOX1Q06278 1338 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 FILIP1LQ4L180 1135 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 SUCLG2Q96I99 432 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 CDK5RAP3Q96JB5 506 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 MKNK2Q9HBH9 465 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 A1BGP04217 495 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 GCKRQ14397 625 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 ZGPATQ8N5A5 531 aaKnown RBP13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 ZNF287Q9HBT7 754 aa13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 ORC3Q9UBD5 711 aaPredicted RBP13.35□□□□□ -0.27
PCDHGC3-201ENST00000308177 RAD50Q92878 1312 aa13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 CREB3L3Q68CJ9 461 aa13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 NBPF5PQ86XG9 351 aaPredicted RBP13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 RPGRQ92834 1020 aaKnown RBP13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 AK7Q96M32 723 aa13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 CCDC43Q96MW1 224 aaKnown RBP13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 DACH1Q9UI36 760 aa13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 ABCA6Q8N139 1617 aa13.34□□□□□ -0.27
PCDHGC3-201ENST00000308177 PPFIA3O75145 1194 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms