RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IPO4Q8TEX9 1081 aaKnown RBP13.04□□□□□ -0.32
LSM3-201ENST00000306024 TRERF1Q96PN7 1200 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 OVOS2A0A0G2JMS6 1433 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 TRPM3Q9HCF6 1732 aaPredicted RBP13.04□□□□□ -0.32
LSM3-201ENST00000306024 KSR2Q6VAB6 950 aa13.03□□□□□ -0.32
LSM3-201ENST00000306024 ZNF592Q92610 1267 aa13.03□□□□□ -0.32
LSM3-201ENST00000306024 TTC12Q9H892 705 aaPredicted RBP13.03□□□□□ -0.32
LSM3-201ENST00000306024 USP25Q9UHP3 1055 aa13.03□□□□□ -0.32
LSM3-201ENST00000306024 RBM25P49756 843 aaKnown RBP13.03□□□□□ -0.32
LSM3-201ENST00000306024 PROSER3Q2NL68 480 aa13.02□□□□□ -0.32
LSM3-201ENST00000306024 ZNF772Q68DY9 489 aaPredicted RBP13.02□□□□□ -0.32
LSM3-201ENST00000306024 CDC45O75419 566 aa13.02□□□□□ -0.33
LSM3-201ENST00000306024 CHD1LQ86WJ1 897 aa13.02□□□□□ -0.33
LSM3-201ENST00000306024 C17orf53Q8N3J3 647 aaPredicted RBP13.02□□□□□ -0.33
LSM3-201ENST00000306024 ALS2Q96Q42 1657 aa13.02□□□□□ -0.33
LSM3-201ENST00000306024 XIRP1Q702N8 1843 aaKnown RBP13.02□□□□□ -0.33
LSM3-201ENST00000306024 MARCH10Q8NA82 808 aaPredicted RBP13.01□□□□□ -0.33
LSM3-201ENST00000306024 SPC24Q8NBT2 197 aa13.01□□□□□ -0.33
LSM3-201ENST00000306024 LRRFIP2Q9Y608 721 aaKnown RBP13.01□□□□□ -0.33
LSM3-201ENST00000306024 GPTP24298 496 aa13.01□□□□□ -0.33
LSM3-201ENST00000306024 CWC22Q9HCG8 908 aaKnown RBP13.01□□□□□ -0.33
LSM3-201ENST00000306024 SURF6O75683 361 aaKnown RBP13□□□□□ -0.33
LSM3-201ENST00000306024 CWF19L2Q2TBE0 894 aaKnown RBP13□□□□□ -0.33
LSM3-201ENST00000306024 BARGINQ6ZT62 677 aa13□□□□□ -0.33
LSM3-201ENST00000306024 BCL2L12Q9HB09 334 aa13□□□□□ -0.33
LSM3-201ENST00000306024 RPAP2Q8IXW5 612 aaPredicted RBP13□□□□□ -0.33
LSM3-201ENST00000306024 SRGAP3O43295 1099 aa13□□□□□ -0.33
LSM3-201ENST00000306024 TBC1D2BQ9UPU7 963 aa13□□□□□ -0.33
LSM3-201ENST00000306024 A0A087WZG4 1122 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 BRPF1P55201 1214 aaPredicted RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 ATP2B3Q16720 1220 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 INTS3Q68E01 1043 aaKnown RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 ZBTB40Q9NUA8 1239 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 KCNQ2O43526 872 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 FNBP4Q8N3X1 1017 aaPredicted RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 HEG1Q9ULI3 1381 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 ZBTB7BO15156 539 aaPredicted RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 SF3B2Q13435 895 aaKnown RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 NKX1-1Q15270 411 aaPredicted RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 TIGD1Q96MW7 591 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 LMBRD1Q9NUN5 540 aa12.99□□□□□ -0.33
LSM3-201ENST00000306024 AHDC1Q5TGY3 1603 aaPredicted RBP12.99□□□□□ -0.33
LSM3-201ENST00000306024 LOC102724428A0A0B4J2F2 783 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 ZBTB22O15209 634 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 SIK1P57059 783 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 BICDL1Q6ZP65 573 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 TBC1D9Q6ZT07 1266 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 LINS1Q8NG48 757 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 KDM6AO15550 1401 aaPredicted RBP12.98□□□□□ -0.33
LSM3-201ENST00000306024 G3BP1Q13283 466 aaKnown RBP eCLIP12.98□□□□□ -0.33
LSM3-201ENST00000306024 UBE3BQ7Z3V4 1068 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 ABCC4O15439 1325 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 CD2BP2O95400 341 aaKnown RBP12.98□□□□□ -0.33
LSM3-201ENST00000306024 RXRBP28702 533 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 KRT27Q7Z3Y8 459 aa12.98□□□□□ -0.33
LSM3-201ENST00000306024 CCNL1Q9UK58 526 aaPredicted RBP12.98□□□□□ -0.33
LSM3-201ENST00000306024 ADCY5O95622 1261 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 KCNQ4P56696 695 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 IBTKQ9P2D0 1353 aaPredicted RBP12.97□□□□□ -0.33
LSM3-201ENST00000306024 GCC1Q96CN9 775 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 EXOC6BQ9Y2D4 811 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 PHRF1Q9P1Y6 1649 aaKnown RBP12.97□□□□□ -0.33
LSM3-201ENST00000306024 ALDH1L1O75891 902 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 PIBF1Q8WXW3 757 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 PDLIM2Q96JY6 352 aa12.97□□□□□ -0.33
LSM3-201ENST00000306024 DZIP3Q86Y13 1208 aaKnown RBP12.96□□□□□ -0.33
LSM3-201ENST00000306024 AK7Q96M32 723 aa12.96□□□□□ -0.33
LSM3-201ENST00000306024 CCDC85AQ96PX6 553 aaPredicted RBP12.96□□□□□ -0.33
LSM3-201ENST00000306024 DNAJC2Q99543 621 aaKnown RBP12.96□□□□□ -0.33
LSM3-201ENST00000306024 BMP2KLQ5H9B9 411 aa12.96□□□□□ -0.33
LSM3-201ENST00000306024 TTLL7Q6ZT98 887 aa12.96□□□□□ -0.33
LSM3-201ENST00000306024 FAM184AQ8NB25 1140 aa12.96□□□□□ -0.33
LSM3-201ENST00000306024 TMEM63CQ9P1W3 806 aa12.96□□□□□ -0.33
LSM3-201ENST00000306024 RGPD5Q99666 1765 aa12.96□□□□□ -0.34
LSM3-201ENST00000306024 ZPR1O75312 459 aa12.96□□□□□ -0.34
LSM3-201ENST00000306024 MCCP23508 829 aa12.96□□□□□ -0.34
LSM3-201ENST00000306024 SIL1Q9H173 461 aa12.96□□□□□ -0.34
LSM3-201ENST00000306024 CWC25Q9NXE8 425 aaPredicted RBP12.96□□□□□ -0.34
LSM3-201ENST00000306024 CALCOCO1Q9P1Z2 691 aa12.96□□□□□ -0.34
LSM3-201ENST00000306024 GRM8O00222 908 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 RBM6P78332 1123 aaKnown RBP12.95□□□□□ -0.34
LSM3-201ENST00000306024 HDAC1Q13547 482 aaPredicted RBP12.95□□□□□ -0.34
LSM3-201ENST00000306024 HSP90AB3PQ58FF7 597 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 TRIM37O94972 964 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 HSP90AB4PQ58FF6 505 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 PLBD2Q8NHP8 589 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 FEZ1Q99689 392 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 CCDC87Q9NVE4 849 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 OGFRQ9NZT2 677 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 ZNF652Q9Y2D9 606 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 NHSL1Q5SYE7 1610 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 RIOK3O14730 519 aaKnown RBP12.95□□□□□ -0.34
LSM3-201ENST00000306024 CCDC112Q8NEF3 446 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 ZBTB1Q9Y2K1 713 aa12.95□□□□□ -0.34
LSM3-201ENST00000306024 FAM196AQ6ZSG2 479 aa12.94□□□□□ -0.34
LSM3-201ENST00000306024 METTL22Q9BUU2 404 aaPredicted RBP12.94□□□□□ -0.34
LSM3-201ENST00000306024 GDPD2Q9HCC8 539 aa12.94□□□□□ -0.34
LSM3-201ENST00000306024 TRMT112Q9UI30 125 aaKnown RBP12.94□□□□□ -0.34
LSM3-201ENST00000306024 RGPD2P0DJD1 1756 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 1123.1 ms