RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 LCMT1Q9UIC8 334 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 AGLP35573 1532 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 ZFYVE9O95405 1425 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 SSH2Q76I76 1423 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 NUTM2FA1L443 756 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 ATP8B2P98198 1209 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 CCAR2Q8N163 923 aaKnown RBP15.91■□□□□ 0.14
SKA3-201ENST00000298260 PI4K2BQ8TCG2 481 aa15.91■□□□□ 0.14
SKA3-201ENST00000298260 FTOQ9C0B1 505 aaKnown RBP eCLIP15.91■□□□□ 0.14
SKA3-201ENST00000298260 PNMA6AP0CW24 399 aaPredicted RBP15.9■□□□□ 0.14
SKA3-201ENST00000298260 ARHGAP29Q52LW3 1261 aa15.9■□□□□ 0.14
SKA3-201ENST00000298260 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.9■□□□□ 0.14
SKA3-201ENST00000298260 LEO1Q8WVC0 666 aaPredicted RBP15.9■□□□□ 0.14
SKA3-201ENST00000298260 CLSTN2Q9H4D0 955 aa15.9■□□□□ 0.14
SKA3-201ENST00000298260 NEXMIFQ5QGS0 1516 aa15.9■□□□□ 0.14
SKA3-201ENST00000298260 GOLGA6L19H0YKK7 550 aa15.9■□□□□ 0.14
SKA3-201ENST00000298260 LTKP29376 864 aa15.89■□□□□ 0.13
SKA3-201ENST00000298260 CCT4P50991 539 aaKnown RBP15.89■□□□□ 0.13
SKA3-201ENST00000298260 TNRQ92752 1358 aa15.89■□□□□ 0.13
SKA3-201ENST00000298260 IL17RAQ96F46 866 aa15.89■□□□□ 0.13
SKA3-201ENST00000298260 TSPYL4Q9UJ04 414 aa15.89■□□□□ 0.13
SKA3-201ENST00000298260 IQCB1Q15051 598 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 CDC42BPGQ6DT37 1551 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 CCDC171Q6TFL3 1326 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 TXNDC2Q86VQ3 553 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 C10orf67Q8IYJ2 551 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 SMARCE1Q969G3 411 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 RBM33Q96EV2 1170 aaKnown RBP15.88■□□□□ 0.13
SKA3-201ENST00000298260 TUBGCP6Q96RT7 1819 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 RSPH14Q9UHP6 348 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 ANKRD26Q9UPS8 1709 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 TMEM131LA2VDJ0 1609 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 BMS1Q14692 1282 aaKnown RBP15.88■□□□□ 0.13
SKA3-201ENST00000298260 PTPN21Q16825 1174 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 KRBA2Q6ZNG9 492 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 CYP46A1Q9Y6A2 500 aa15.88■□□□□ 0.13
SKA3-201ENST00000298260 H2AFXP16104 143 aaPredicted RBP15.87■□□□□ 0.13
SKA3-201ENST00000298260 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.87■□□□□ 0.13
SKA3-201ENST00000298260 CCDC34Q96HJ3 373 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 RPGRIP1LQ68CZ1 1315 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 TTC21AQ8NDW8 1320 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 JAK2O60674 1132 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 FLIIQ13045 1269 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 PPP1R42Q7Z4L9 355 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 A2ML1A8K2U0 1454 aa15.87■□□□□ 0.13
SKA3-201ENST00000298260 RAB11FIP3O75154 756 aa15.86■□□□□ 0.13
SKA3-201ENST00000298260 TNNT3P45378 269 aaPredicted RBP15.86■□□□□ 0.13
SKA3-201ENST00000298260 SNW1Q13573 536 aaKnown RBP15.86■□□□□ 0.13
SKA3-201ENST00000298260 SOS1Q07889 1333 aaPredicted RBP15.86■□□□□ 0.13
SKA3-201ENST00000298260 EIF4A2Q14240 407 aaKnown RBP15.86■□□□□ 0.13
SKA3-201ENST00000298260 E4F1Q66K89 784 aaPredicted RBP15.86■□□□□ 0.13
SKA3-201ENST00000298260 RHPN1Q8TCX5 695 aa15.86■□□□□ 0.13
SKA3-201ENST00000298260 USP44Q9H0E7 712 aa15.86■□□□□ 0.13
SKA3-201ENST00000298260 BECN2A8MW95 431 aa15.86■□□□□ 0.13
SKA3-201ENST00000298260 PTPRMP28827 1452 aa15.85■□□□□ 0.13
SKA3-201ENST00000298260 CPSF1Q10570 1443 aaKnown RBP15.85■□□□□ 0.13
SKA3-201ENST00000298260 SLC20A2Q08357 652 aa15.85■□□□□ 0.13
SKA3-201ENST00000298260 DDX19AQ9NUU7 478 aaKnown RBP15.85■□□□□ 0.13
SKA3-201ENST00000298260 VPS53Q5VIR6 699 aa15.85■□□□□ 0.13
SKA3-201ENST00000298260 FAM177A1Q8N128 213 aaPredicted RBP15.85■□□□□ 0.13
SKA3-201ENST00000298260 FMNL2Q96PY5 1086 aa15.85■□□□□ 0.13
SKA3-201ENST00000298260 PPP6R1Q9UPN7 881 aa15.85■□□□□ 0.13
SKA3-201ENST00000298260 NPHP3Q7Z494 1330 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 GNAI3P08754 354 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 HSP90AB2PQ58FF8 381 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 AOPEPQ8N6M6 819 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 FAM227BQ96M60 508 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 SRGAP3O43295 1099 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 SASH3O75995 380 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 CNTROBQ8N137 903 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 ZSWIM6Q9HCJ5 1215 aa15.84■□□□□ 0.13
SKA3-201ENST00000298260 UBTFL1P0CB47 393 aaPredicted RBP15.83■□□□□ 0.13
SKA3-201ENST00000298260 RBM43Q6ZSC3 357 aaKnown RBP15.83■□□□□ 0.13
SKA3-201ENST00000298260 COG3Q96JB2 828 aa15.83■□□□□ 0.13
SKA3-201ENST00000298260 PPP1R13BQ96KQ4 1090 aa15.83■□□□□ 0.13
SKA3-201ENST00000298260 STK31Q9BXU1 1019 aa15.83■□□□□ 0.13
SKA3-201ENST00000298260 KIF20BQ96Q89 1820 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 FANCGO15287 622 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 IRX3P78415 501 aaPredicted RBP15.83■□□□□ 0.12
SKA3-201ENST00000298260 GOLGA8FQ08AF8 430 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 GOLGA8DPQ0D2H9 430 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 SLFNL1Q499Z3 407 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 DHX40Q8IX18 779 aaKnown RBP15.83■□□□□ 0.12
SKA3-201ENST00000298260 GOLPH3LQ9H4A5 285 aa15.83■□□□□ 0.12
SKA3-201ENST00000298260 CDK12Q9NYV4 1490 aaPredicted RBP15.83■□□□□ 0.12
SKA3-201ENST00000298260 METP08581 1390 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 NBPF11Q86T75 865 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 SCAND2PQ9GZW5 306 aaPredicted RBP15.82■□□□□ 0.12
SKA3-201ENST00000298260 PHAXQ9H814 394 aaKnown RBP15.82■□□□□ 0.12
SKA3-201ENST00000298260 DNAI1Q9UI46 699 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 ELP1O95163 1332 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 TAF7LQ5H9L4 462 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 HOMER1Q86YM7 354 aa15.82■□□□□ 0.12
SKA3-201ENST00000298260 SH2B1Q9NRF2 756 aaPredicted RBP15.82■□□□□ 0.12
SKA3-201ENST00000298260 RBM8AQ9Y5S9 174 aaKnown RBP15.82■□□□□ 0.12
SKA3-201ENST00000298260 NBPF7P0C2Y1 421 aaPredicted RBP15.81■□□□□ 0.12
SKA3-201ENST00000298260 CCDC191Q8NCU4 936 aa15.81■□□□□ 0.12
SKA3-201ENST00000298260 MRFAP1L1Q96HT8 127 aa15.81■□□□□ 0.12
SKA3-201ENST00000298260 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.81■□□□□ 0.12
SKA3-201ENST00000298260 ARMCX5Q6P1M9 558 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms