RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 FOXO4P98177 505 aa28.19■■■□□ 2.1
PTX3-201ENST00000295927 LINC00116Q8NCU8 138 aa28.18■■■□□ 2.1
PTX3-201ENST00000295927 BRWD3Q6RI45 1802 aa28.18■■■□□ 2.1
PTX3-201ENST00000295927 MX1P20591 662 aa28.17■■■□□ 2.1
PTX3-201ENST00000295927 ERC1Q8IUD2 1116 aa28.17■■■□□ 2.1
PTX3-201ENST00000295927 GPTP24298 496 aa28.16■■■□□ 2.1
PTX3-201ENST00000295927 RFX5P48382 616 aaPredicted RBP28.16■■■□□ 2.1
PTX3-201ENST00000295927 KCNQ4P56696 695 aa28.16■■■□□ 2.1
PTX3-201ENST00000295927 LMBR1LQ6UX01 489 aa28.16■■■□□ 2.1
PTX3-201ENST00000295927 G3BP1Q13283 466 aaKnown RBP eCLIP28.15■■■□□ 2.1
PTX3-201ENST00000295927 NLRP10Q86W26 655 aa28.15■■■□□ 2.1
PTX3-201ENST00000295927 KLHDC4Q8TBB5 520 aa28.15■■■□□ 2.1
PTX3-201ENST00000295927 STAP2Q9UGK3 403 aa28.15■■■□□ 2.1
PTX3-201ENST00000295927 LY75O60449 1722 aa28.14■■■□□ 2.1
PTX3-201ENST00000295927 PCCAP05165 728 aaPredicted RBP28.14■■■□□ 2.1
PTX3-201ENST00000295927 NUTM1Q86Y26 1132 aa28.14■■■□□ 2.09
PTX3-201ENST00000295927 COPRSQ9NQ92 184 aa28.14■■■□□ 2.09
PTX3-201ENST00000295927 TUBGCP6Q96RT7 1819 aa28.13■■■□□ 2.09
PTX3-201ENST00000295927 TSHZ3Q63HK5 1081 aa28.13■■■□□ 2.09
PTX3-201ENST00000295927 ZBTB38Q8NAP3 1195 aaPredicted RBP28.13■■■□□ 2.09
PTX3-201ENST00000295927 SIL1Q9H173 461 aa28.13■■■□□ 2.09
PTX3-201ENST00000295927 PTPN12Q05209 780 aaKnown RBP28.12■■■□□ 2.09
PTX3-201ENST00000295927 SASH1O94885 1247 aa28.12■■■□□ 2.09
PTX3-201ENST00000295927 SDSP20132 328 aa28.12■■■□□ 2.09
PTX3-201ENST00000295927 FAM89AQ96GI7 184 aa28.12■■■□□ 2.09
PTX3-201ENST00000295927 CNTNAP4Q9C0A0 1308 aa28.11■■■□□ 2.09
PTX3-201ENST00000295927 CAMTA2O94983 1202 aa28.11■■■□□ 2.09
PTX3-201ENST00000295927 ZNF34Q8IZ26 560 aa28.11■■■□□ 2.09
PTX3-201ENST00000295927 UPF2Q9HAU5 1272 aaKnown RBP28.11■■■□□ 2.09
PTX3-201ENST00000295927 CDC45O75419 566 aa28.1■■■□□ 2.09
PTX3-201ENST00000295927 ZNF772Q68DY9 489 aaPredicted RBP28.1■■■□□ 2.09
PTX3-201ENST00000295927 TBC1D9Q6ZT07 1266 aa28.1■■■□□ 2.09
PTX3-201ENST00000295927 CLASRPQ8N2M8 674 aaKnown RBP28.1■■■□□ 2.09
PTX3-201ENST00000295927 CHMP3Q9Y3E7 222 aa28.1■■■□□ 2.09
PTX3-201ENST00000295927 BCL11BQ9C0K0 894 aaPredicted RBP28.1■■■□□ 2.09
PTX3-201ENST00000295927 AOX1Q06278 1338 aa28.09■■■□□ 2.09
PTX3-201ENST00000295927 KRT27Q7Z3Y8 459 aa28.09■■■□□ 2.09
PTX3-201ENST00000295927 CCNL1Q9UK58 526 aaPredicted RBP28.09■■■□□ 2.09
PTX3-201ENST00000295927 TAF1LQ8IZX4 1826 aa28.09■■■□□ 2.09
PTX3-201ENST00000295927 BCORQ6W2J9 1755 aa28.08■■■□□ 2.09
PTX3-201ENST00000295927 UBN2Q6ZU65 1347 aa28.08■■■□□ 2.09
PTX3-201ENST00000295927 MFAP1P55081 439 aaKnown RBP28.08■■■□□ 2.09
PTX3-201ENST00000295927 PLA2G12BQ9BX93 195 aa28.08■■■□□ 2.09
PTX3-201ENST00000295927 CDHR2Q9BYE9 1310 aa28.08■■■□□ 2.08
PTX3-201ENST00000295927 RC3H1Q5TC82 1133 aaKnown RBP28.07■■■□□ 2.08
PTX3-201ENST00000295927 RBM6P78332 1123 aaKnown RBP28.06■■■□□ 2.08
PTX3-201ENST00000295927 FAM196AQ6ZSG2 479 aa28.06■■■□□ 2.08
PTX3-201ENST00000295927 SYNE4Q8N205 404 aa28.06■■■□□ 2.08
PTX3-201ENST00000295927 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.06■■■□□ 2.08
PTX3-201ENST00000295927 IPO9Q96P70 1041 aaKnown RBP28.06■■■□□ 2.08
PTX3-201ENST00000295927 TRMT112Q9UI30 125 aaKnown RBP28.06■■■□□ 2.08
PTX3-201ENST00000295927 USP42Q9H9J4 1324 aaKnown RBP28.04■■■□□ 2.08
PTX3-201ENST00000295927 MYH3P11055 1940 aa28.04■■■□□ 2.08
PTX3-201ENST00000295927 TBC1D32Q96NH3 1257 aa28.04■■■□□ 2.08
PTX3-201ENST00000295927 IFIT2P09913 472 aaKnown RBP28.03■■■□□ 2.08
PTX3-201ENST00000295927 AACSQ86V21 672 aa28.03■■■□□ 2.08
PTX3-201ENST00000295927 PI4K2BQ8TCG2 481 aa28.03■■■□□ 2.08
PTX3-201ENST00000295927 EAF2Q96CJ1 260 aaPredicted RBP28.02■■■□□ 2.08
PTX3-201ENST00000295927 RPS6KA4O75676 772 aa28.02■■■□□ 2.08
PTX3-201ENST00000295927 CSF1RP07333 972 aa28.02■■■□□ 2.08
PTX3-201ENST00000295927 TTC41PQ6P2S7 1318 aa28.01■■■□□ 2.07
PTX3-201ENST00000295927 IRS4O14654 1257 aaPredicted RBP28.01■■■□□ 2.07
PTX3-201ENST00000295927 SUSD4Q5VX71 490 aa28.01■■■□□ 2.07
PTX3-201ENST00000295927 ZNF652Q9Y2D9 606 aa28■■■□□ 2.07
PTX3-201ENST00000295927 TFCP2Q12800 502 aa28■■■□□ 2.07
PTX3-201ENST00000295927 PARP10Q53GL7 1025 aa28■■■□□ 2.07
PTX3-201ENST00000295927 AK9Q5TCS8 1911 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 TRIM6-TRIM34B2RNG4 842 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 GNPATO15228 680 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 CCDC57Q2TAC2 916 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 SMIM5Q71RC9 77 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 ZNF594Q96JF6 807 aaPredicted RBP27.99■■■□□ 2.07
PTX3-201ENST00000295927 NIP7Q9Y221 180 aaKnown RBP eCLIP27.99■■■□□ 2.07
PTX3-201ENST00000295927 C4BP0C0L5 1744 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 SCN7AQ01118 1682 aa27.99■■■□□ 2.07
PTX3-201ENST00000295927 MSH5O43196 834 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 CLEC4GQ6UXB4 293 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 C22orf23Q9BZE7 217 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 CCDC8Q9H0W5 538 aaPredicted RBP27.98■■■□□ 2.07
PTX3-201ENST00000295927 ATG9AQ7Z3C6 839 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 GPATCH3Q96I76 525 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 CCDC85AQ96PX6 553 aaPredicted RBP27.98■■■□□ 2.07
PTX3-201ENST00000295927 UTP14AQ9BVJ6 771 aaKnown RBP27.98■■■□□ 2.07
PTX3-201ENST00000295927 ECHDC1Q9NTX5 307 aa27.98■■■□□ 2.07
PTX3-201ENST00000295927 TRIM37O94972 964 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 CTSWP56202 376 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 CASC1Q6TDU7 716 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 TTLL11Q8NHH1 800 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 RILPL2Q969X0 211 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 DDRGK1Q96HY6 314 aa27.97■■■□□ 2.07
PTX3-201ENST00000295927 PDE8AO60658 829 aa27.96■■■□□ 2.07
PTX3-201ENST00000295927 FAM177BA6PVY3 158 aa27.96■■■□□ 2.07
PTX3-201ENST00000295927 EYA2O00167 538 aa27.96■■■□□ 2.07
PTX3-201ENST00000295927 ERC2O15083 957 aa27.96■■■□□ 2.07
PTX3-201ENST00000295927 GLRX3O76003 335 aaKnown RBP27.96■■■□□ 2.07
PTX3-201ENST00000295927 TLR7Q9NYK1 1049 aaKnown RBP27.96■■■□□ 2.07
PTX3-201ENST00000295927 RTCBQ9Y3I0 505 aaKnown RBP27.96■■■□□ 2.07
PTX3-201ENST00000295927 SH3TC1Q8TE82 1336 aa27.95■■■□□ 2.07
PTX3-201ENST00000295927 IL15P40933 162 aaPredicted RBP27.95■■■□□ 2.06
PTX3-201ENST00000295927 TNNI3KQ59H18 835 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms