RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZNF34Q8IZ26 560 aa17.46■□□□□ 0.39
SS18-201ENST00000269137 KCNQ4P56696 695 aa17.45■□□□□ 0.38
SS18-201ENST00000269137 FOXO4P98177 505 aa17.45■□□□□ 0.38
SS18-201ENST00000269137 ZBTB38Q8NAP3 1195 aaPredicted RBP17.45■□□□□ 0.38
SS18-201ENST00000269137 KIF1BPQ96EK5 621 aa17.45■□□□□ 0.38
SS18-201ENST00000269137 TAF1LQ8IZX4 1826 aa17.45■□□□□ 0.38
SS18-201ENST00000269137 RPS6KA4O75676 772 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 BMP2KLQ5H9B9 411 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 C16orf71Q8IYS4 520 aaPredicted RBP17.44■□□□□ 0.38
SS18-201ENST00000269137 PLA2G12BQ9BX93 195 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 RGS17Q9UGC6 210 aaPredicted RBP17.44■□□□□ 0.38
SS18-201ENST00000269137 CLEC4GQ6UXB4 293 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 ERC1Q8IUD2 1116 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 RHPN1Q8TCX5 695 aa17.44■□□□□ 0.38
SS18-201ENST00000269137 CDHR2Q9BYE9 1310 aa17.43■□□□□ 0.38
SS18-201ENST00000269137 GPTP24298 496 aa17.43■□□□□ 0.38
SS18-201ENST00000269137 OSBPL3Q9H4L5 887 aa17.43■□□□□ 0.38
SS18-201ENST00000269137 COPRSQ9NQ92 184 aa17.43■□□□□ 0.38
SS18-201ENST00000269137 EP400Q96L91 3159 aa17.43■□□□□ 0.38
SS18-201ENST00000269137 TRIM37O94972 964 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 RFX5P48382 616 aaPredicted RBP17.42■□□□□ 0.38
SS18-201ENST00000269137 SLC27A3Q5K4L6 730 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 LMBR1LQ6UX01 489 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 OTUD7AQ8TE49 926 aaPredicted RBP17.42■□□□□ 0.38
SS18-201ENST00000269137 SALL3Q9BXA9 1300 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 PARP10Q53GL7 1025 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 PA2G4Q9UQ80 394 aaKnown RBP17.42■□□□□ 0.38
SS18-201ENST00000269137 ZNF652Q9Y2D9 606 aa17.42■□□□□ 0.38
SS18-201ENST00000269137 BCORQ6W2J9 1755 aa17.41■□□□□ 0.38
SS18-201ENST00000269137 UBN2Q6ZU65 1347 aa17.41■□□□□ 0.38
SS18-201ENST00000269137 HMGB2P26583 209 aaKnown RBP17.41■□□□□ 0.38
SS18-201ENST00000269137 G3BP1Q13283 466 aaKnown RBP eCLIP17.41■□□□□ 0.38
SS18-201ENST00000269137 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
SS18-201ENST00000269137 FAM89AQ96GI7 184 aa17.41■□□□□ 0.38
SS18-201ENST00000269137 PTPN12Q05209 780 aaKnown RBP17.4■□□□□ 0.38
SS18-201ENST00000269137 OS9Q13438 667 aaPredicted RBP17.4■□□□□ 0.38
SS18-201ENST00000269137 C4BP0C0L5 1744 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 GNPATO15228 680 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 PDE1AP54750 535 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 POTEAQ6S8J7 498 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 LRRC4BQ9NT99 713 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 STAP2Q9UGK3 403 aa17.4■□□□□ 0.38
SS18-201ENST00000269137 TRMT112Q9UI30 125 aaKnown RBP17.4■□□□□ 0.38
SS18-201ENST00000269137 RTCBQ9Y3I0 505 aaKnown RBP17.4■□□□□ 0.38
SS18-201ENST00000269137 CSF1RP07333 972 aa17.39■□□□□ 0.37
SS18-201ENST00000269137 TTC22Q5TAA0 569 aa17.39■□□□□ 0.37
SS18-201ENST00000269137 IL1RAPL2Q9NP60 686 aa17.39■□□□□ 0.37
SS18-201ENST00000269137 NARFQ9UHQ1 456 aa17.39■□□□□ 0.37
SS18-201ENST00000269137 AK7Q96M32 723 aa17.38■□□□□ 0.37
SS18-201ENST00000269137 MX1P20591 662 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 NIP7Q9Y221 180 aaKnown RBP eCLIP17.37■□□□□ 0.37
SS18-201ENST00000269137 AOX1Q06278 1338 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 SCN7AQ01118 1682 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 IRS4O14654 1257 aaPredicted RBP17.37■□□□□ 0.37
SS18-201ENST00000269137 PLSCR1O15162 318 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 SASH1O94885 1247 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 GSPT1P15170 499 aaKnown RBP17.37■□□□□ 0.37
SS18-201ENST00000269137 SUSD4Q5VX71 490 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 CLASRPQ8N2M8 674 aaKnown RBP17.37■□□□□ 0.37
SS18-201ENST00000269137 KLHDC4Q8TBB5 520 aa17.37■□□□□ 0.37
SS18-201ENST00000269137 UTP14AQ9BVJ6 771 aaKnown RBP17.37■□□□□ 0.37
SS18-201ENST00000269137 ADRA2BP18089 450 aa17.36■□□□□ 0.37
SS18-201ENST00000269137 SYNE4Q8N205 404 aa17.36■□□□□ 0.37
SS18-201ENST00000269137 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
SS18-201ENST00000269137 CHMP3Q9Y3E7 222 aa17.36■□□□□ 0.37
SS18-201ENST00000269137 SH3TC1Q8TE82 1336 aa17.36■□□□□ 0.37
SS18-201ENST00000269137 PDE8AO60658 829 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 SIL1Q9H173 461 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 BCL2L12Q9HB09 334 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 MYH3P11055 1940 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 ZPR1O75312 459 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 HSP90B1P14625 803 aaKnown RBP17.35■□□□□ 0.37
SS18-201ENST00000269137 ARHGEF1Q92888 912 aaKnown RBP17.35■□□□□ 0.37
SS18-201ENST00000269137 FBXO3Q9UK99 471 aa17.35■□□□□ 0.37
SS18-201ENST00000269137 USP42Q9H9J4 1324 aaKnown RBP17.34■□□□□ 0.37
SS18-201ENST00000269137 NTSR2O95665 410 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 CTSWP56202 376 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 TXNRD1Q16881 649 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 CCDC57Q2TAC2 916 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 TRAPPC3LQ5T215 181 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 PROM2Q8N271 834 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 TTLL11Q8NHH1 800 aa17.34■□□□□ 0.37
SS18-201ENST00000269137 CIAO1O76071 339 aa17.33■□□□□ 0.37
SS18-201ENST00000269137 USPL1Q5W0Q7 1092 aa17.33■□□□□ 0.37
SS18-201ENST00000269137 AMIGO3Q86WK7 504 aa17.33■□□□□ 0.37
SS18-201ENST00000269137 NUTM1Q86Y26 1132 aa17.33■□□□□ 0.37
SS18-201ENST00000269137 SMIM5Q71RC9 77 aa17.33■□□□□ 0.36
SS18-201ENST00000269137 UBR3Q6ZT12 1888 aa17.33■□□□□ 0.36
SS18-201ENST00000269137 EYA2O00167 538 aa17.32■□□□□ 0.36
SS18-201ENST00000269137 RFC4P35249 363 aa17.32■□□□□ 0.36
SS18-201ENST00000269137 IL15P40933 162 aaPredicted RBP17.32■□□□□ 0.36
SS18-201ENST00000269137 IFIT5Q13325 482 aaKnown RBP17.32■□□□□ 0.36
SS18-201ENST00000269137 ATG9AQ7Z3C6 839 aa17.32■□□□□ 0.36
SS18-201ENST00000269137 SRP68Q9UHB9 627 aaKnown RBP17.32■□□□□ 0.36
SS18-201ENST00000269137 TTC41PQ6P2S7 1318 aa17.32■□□□□ 0.36
SS18-201ENST00000269137 SEC24BO95487 1268 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 APBA3O96018 575 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 IFIT2P09913 472 aaKnown RBP17.31■□□□□ 0.36
SS18-201ENST00000269137 SDSP20132 328 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 EAF2Q96CJ1 260 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms