RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 HSP90AB3PQ58FF7 597 aa27.98■■■□□ 2.07
CDX1-201ENST00000231656 PNMA6EA0A0J9YXQ4 647 aa27.97■■■□□ 2.07
CDX1-201ENST00000231656 C16orf71Q8IYS4 520 aaPredicted RBP27.97■■■□□ 2.07
CDX1-201ENST00000231656 RTCBQ9Y3I0 505 aaKnown RBP27.97■■■□□ 2.07
CDX1-201ENST00000231656 BCORQ6W2J9 1755 aa27.97■■■□□ 2.07
CDX1-201ENST00000231656 SMIM5Q71RC9 77 aa27.96■■■□□ 2.07
CDX1-201ENST00000231656 AK7Q96M32 723 aa27.96■■■□□ 2.07
CDX1-201ENST00000231656 SMARCA5O60264 1052 aaPredicted RBP27.96■■■□□ 2.07
CDX1-201ENST00000231656 AMIGO3Q86WK7 504 aa27.96■■■□□ 2.07
CDX1-201ENST00000231656 HDAC5Q9UQL6 1122 aa27.96■■■□□ 2.07
CDX1-201ENST00000231656 RGPD3A6NKT7 1758 aaPredicted RBP27.95■■■□□ 2.06
CDX1-201ENST00000231656 RGPD4Q7Z3J3 1758 aa27.95■■■□□ 2.06
CDX1-201ENST00000231656 UBR3Q6ZT12 1888 aa27.94■■■□□ 2.06
CDX1-201ENST00000231656 UBE3BQ7Z3V4 1068 aa27.94■■■□□ 2.06
CDX1-201ENST00000231656 OTUD7AQ8TE49 926 aaPredicted RBP27.94■■■□□ 2.06
CDX1-201ENST00000231656 JARID2Q92833 1246 aaPredicted RBP27.94■■■□□ 2.06
CDX1-201ENST00000231656 SUCLG2Q96I99 432 aa27.94■■■□□ 2.06
CDX1-201ENST00000231656 H7C1W4 665 aa27.93■■■□□ 2.06
CDX1-201ENST00000231656 GSPT1P15170 499 aaKnown RBP27.93■■■□□ 2.06
CDX1-201ENST00000231656 GPTP24298 496 aa27.93■■■□□ 2.06
CDX1-201ENST00000231656 KAZALD1Q96I82 304 aa27.93■■■□□ 2.06
CDX1-201ENST00000231656 APBB1O00213 710 aa27.92■■■□□ 2.06
CDX1-201ENST00000231656 HMGB2P26583 209 aaKnown RBP27.92■■■□□ 2.06
CDX1-201ENST00000231656 CASP7P55210 303 aa27.92■■■□□ 2.06
CDX1-201ENST00000231656 TTC22Q5TAA0 569 aa27.92■■■□□ 2.06
CDX1-201ENST00000231656 MFAP1P55081 439 aaKnown RBP27.91■■■□□ 2.06
CDX1-201ENST00000231656 NLRP10Q86W26 655 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 ZNF34Q8IZ26 560 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 SSH3Q8TE77 659 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 EXOC6BQ9Y2D4 811 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 SCN7AQ01118 1682 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 ARHGEF1Q92888 912 aaKnown RBP27.91■■■□□ 2.06
CDX1-201ENST00000231656 C4AP0C0L4 1744 aa27.91■■■□□ 2.06
CDX1-201ENST00000231656 NARFQ9UHQ1 456 aa27.9■■■□□ 2.06
CDX1-201ENST00000231656 ZNF652Q9Y2D9 606 aa27.9■■■□□ 2.06
CDX1-201ENST00000231656 CLEC4GQ6UXB4 293 aa27.89■■■□□ 2.06
CDX1-201ENST00000231656 PPP1R42Q7Z4L9 355 aa27.89■■■□□ 2.06
CDX1-201ENST00000231656 BICC1Q9H694 974 aaKnown RBP27.89■■■□□ 2.06
CDX1-201ENST00000231656 PHF14O94880 888 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 SLC4A3P48751 1232 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 MTX1Q13505 466 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 POLA2Q14181 598 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 TRAPPC3LQ5T215 181 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 C22orf23Q9BZE7 217 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 UBN2Q6ZU65 1347 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 RGL2O15211 777 aa27.88■■■□□ 2.05
CDX1-201ENST00000231656 RTL5Q5HYW3 569 aaPredicted RBP27.88■■■□□ 2.05
CDX1-201ENST00000231656 ADRA2BP18089 450 aa27.87■■■□□ 2.05
CDX1-201ENST00000231656 TBC1D9Q6ZT07 1266 aa27.87■■■□□ 2.05
CDX1-201ENST00000231656 SRGAP3O43295 1099 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 PCCAP05165 728 aaPredicted RBP27.86■■■□□ 2.05
CDX1-201ENST00000231656 EPHA10Q5JZY3 1008 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 ZBTB38Q8NAP3 1195 aaPredicted RBP27.86■■■□□ 2.05
CDX1-201ENST00000231656 LRRCC1Q9C099 1032 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 SRP68Q9UHB9 627 aaKnown RBP27.86■■■□□ 2.05
CDX1-201ENST00000231656 TUBGCP6Q96RT7 1819 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 ZPR1O75312 459 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 CDC45O75419 566 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 USPL1Q5W0Q7 1092 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 OSBPL3Q9H4L5 887 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 BCL2L12Q9HB09 334 aa27.86■■■□□ 2.05
CDX1-201ENST00000231656 DAXXQ9UER7 740 aaPredicted RBP27.86■■■□□ 2.05
CDX1-201ENST00000231656 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.85■■■□□ 2.05
CDX1-201ENST00000231656 RFC4P35249 363 aa27.85■■■□□ 2.05
CDX1-201ENST00000231656 NIP7Q9Y221 180 aaKnown RBP eCLIP27.85■■■□□ 2.05
CDX1-201ENST00000231656 SALL3Q9BXA9 1300 aa27.85■■■□□ 2.05
CDX1-201ENST00000231656 SSFA2P28290 1259 aa27.84■■■□□ 2.05
CDX1-201ENST00000231656 FAM89AQ96GI7 184 aa27.84■■■□□ 2.05
CDX1-201ENST00000231656 CAMKK2Q96RR4 588 aa27.84■■■□□ 2.05
CDX1-201ENST00000231656 BCL11AQ9H165 835 aa27.84■■■□□ 2.05
CDX1-201ENST00000231656 EN1Q05925 392 aaPredicted RBP27.83■■■□□ 2.05
CDX1-201ENST00000231656 USP42Q9H9J4 1324 aaKnown RBP27.83■■■□□ 2.05
CDX1-201ENST00000231656 PARP10Q53GL7 1025 aa27.83■■■□□ 2.05
CDX1-201ENST00000231656 TRMT112Q9UI30 125 aaKnown RBP27.83■■■□□ 2.05
CDX1-201ENST00000231656 ZNF827Q17R98 1081 aa27.82■■■□□ 2.04
CDX1-201ENST00000231656 RABL6Q3YEC7 729 aaPredicted RBP27.82■■■□□ 2.04
CDX1-201ENST00000231656 AKT1S1Q96B36 256 aa27.82■■■□□ 2.04
CDX1-201ENST00000231656 PDE1AP54750 535 aa27.81■■■□□ 2.04
CDX1-201ENST00000231656 FOXO4P98177 505 aa27.81■■■□□ 2.04
CDX1-201ENST00000231656 SF3B2Q13435 895 aaKnown RBP27.81■■■□□ 2.04
CDX1-201ENST00000231656 EZH2Q15910 746 aaKnown RBP27.81■■■□□ 2.04
CDX1-201ENST00000231656 SUSD4Q5VX71 490 aa27.81■■■□□ 2.04
CDX1-201ENST00000231656 RBM25P49756 843 aaKnown RBP27.81■■■□□ 2.04
CDX1-201ENST00000231656 SYNE4Q8N205 404 aa27.81■■■□□ 2.04
CDX1-201ENST00000231656 CDHR2Q9BYE9 1310 aa27.8■■■□□ 2.04
CDX1-201ENST00000231656 RAB11FIP3O75154 756 aa27.8■■■□□ 2.04
CDX1-201ENST00000231656 BECN1Q14457 450 aa27.79■■■□□ 2.04
CDX1-201ENST00000231656 TBC1D9BQ66K14 1250 aa27.79■■■□□ 2.04
CDX1-201ENST00000231656 TFCP2L1Q9NZI6 479 aa27.79■■■□□ 2.04
CDX1-201ENST00000231656 SDSP20132 328 aa27.78■■■□□ 2.04
CDX1-201ENST00000231656 UTP14AQ9BVJ6 771 aaKnown RBP27.78■■■□□ 2.04
CDX1-201ENST00000231656 BAG6P46379 1132 aa27.78■■■□□ 2.04
CDX1-201ENST00000231656 LMBR1LQ6UX01 489 aa27.78■■■□□ 2.04
CDX1-201ENST00000231656 PLA2G12BQ9BX93 195 aa27.78■■■□□ 2.04
CDX1-201ENST00000231656 FAM177BA6PVY3 158 aa27.77■■■□□ 2.04
CDX1-201ENST00000231656 MYH3P11055 1940 aa27.77■■■□□ 2.04
CDX1-201ENST00000231656 SURF6O75683 361 aaKnown RBP27.76■■■□□ 2.03
CDX1-201ENST00000231656 NTSR2O95665 410 aa27.76■■■□□ 2.03
CDX1-201ENST00000231656 BICDL1Q6ZP65 573 aa27.76■■■□□ 2.03
CDX1-201ENST00000231656 IRS4O14654 1257 aaPredicted RBP27.76■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms