RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 PARP10Q53GL7 1025 aa34.43■■■■□ 3.1
CHMP4B-201ENST00000217402 TM4SF1P30408 202 aa34.42■■■■□ 3.1
CHMP4B-201ENST00000217402 GCKRQ14397 625 aa34.42■■■■□ 3.1
CHMP4B-201ENST00000217402 CARMIL3Q8ND23 1372 aa34.42■■■■□ 3.1
CHMP4B-201ENST00000217402 MMP10P09238 476 aa34.41■■■■□ 3.1
CHMP4B-201ENST00000217402 DDR1Q08345 913 aa34.41■■■■□ 3.1
CHMP4B-201ENST00000217402 SUSD4Q5VX71 490 aa34.41■■■■□ 3.1
CHMP4B-201ENST00000217402 MVPQ14764 893 aaKnown RBP34.41■■■■□ 3.1
CHMP4B-201ENST00000217402 COL24A1Q17RW2 1714 aa34.4■■■■□ 3.1
CHMP4B-201ENST00000217402 MTFR1LQ9H019 292 aa34.4■■■■□ 3.1
CHMP4B-201ENST00000217402 ATF5Q9Y2D1 282 aaPredicted RBP34.39■■■■□ 3.1
CHMP4B-201ENST00000217402 RTL5Q5HYW3 569 aaPredicted RBP34.38■■■■□ 3.09
CHMP4B-201ENST00000217402 NBPF5PQ86XG9 351 aaPredicted RBP34.38■■■■□ 3.09
CHMP4B-201ENST00000217402 JARID2Q92833 1246 aaPredicted RBP34.38■■■■□ 3.09
CHMP4B-201ENST00000217402 POLRMTO00411 1230 aaKnown RBP34.37■■■■□ 3.09
CHMP4B-201ENST00000217402 PPP1R42Q7Z4L9 355 aa34.37■■■■□ 3.09
CHMP4B-201ENST00000217402 UTP14AQ9BVJ6 771 aaKnown RBP34.37■■■■□ 3.09
CHMP4B-201ENST00000217402 C9orf78Q9NZ63 289 aaPredicted RBP34.37■■■■□ 3.09
CHMP4B-201ENST00000217402 TRMT112Q9UI30 125 aaKnown RBP34.37■■■■□ 3.09
CHMP4B-201ENST00000217402 NTSR2O95665 410 aa34.36■■■■□ 3.09
CHMP4B-201ENST00000217402 CRBNQ96SW2 442 aa34.36■■■■□ 3.09
CHMP4B-201ENST00000217402 GRM8O00222 908 aa34.35■■■■□ 3.09
CHMP4B-201ENST00000217402 SERPINB2P05120 415 aa34.35■■■■□ 3.09
CHMP4B-201ENST00000217402 FAM89AQ96GI7 184 aa34.35■■■■□ 3.09
CHMP4B-201ENST00000217402 MEIS3Q99687 375 aa34.35■■■■□ 3.09
CHMP4B-201ENST00000217402 PARP3Q9Y6F1 533 aa34.35■■■■□ 3.09
CHMP4B-201ENST00000217402 NPHP1O15259 732 aa34.34■■■■□ 3.09
CHMP4B-201ENST00000217402 UBE3BQ7Z3V4 1068 aa34.34■■■■□ 3.09
CHMP4B-201ENST00000217402 NUTM1Q86Y26 1132 aa34.34■■■■□ 3.09
CHMP4B-201ENST00000217402 USP44Q9H0E7 712 aa34.34■■■■□ 3.09
CHMP4B-201ENST00000217402 DDX19BQ9UMR2 479 aa34.33■■■■□ 3.09
CHMP4B-201ENST00000217402 NBPF7P0C2Y1 421 aaPredicted RBP34.33■■■■□ 3.09
CHMP4B-201ENST00000217402 SYNE4Q8N205 404 aa34.33■■■■□ 3.09
CHMP4B-201ENST00000217402 ZBTB38Q8NAP3 1195 aaPredicted RBP34.33■■■■□ 3.09
CHMP4B-201ENST00000217402 NYXQ9GZU5 481 aa34.33■■■■□ 3.09
CHMP4B-201ENST00000217402 GTF2E1P29083 439 aaPredicted RBP34.32■■■■□ 3.08
CHMP4B-201ENST00000217402 CNBD1Q8NA66 436 aa34.32■■■■□ 3.08
CHMP4B-201ENST00000217402 IBTKQ9P2D0 1353 aaPredicted RBP34.32■■■■□ 3.08
CHMP4B-201ENST00000217402 PCCAP05165 728 aaPredicted RBP34.31■■■■□ 3.08
CHMP4B-201ENST00000217402 TPTE2Q6XPS3 522 aa34.31■■■■□ 3.08
CHMP4B-201ENST00000217402 CCDC24Q8N4L8 307 aa34.31■■■■□ 3.08
CHMP4B-201ENST00000217402 SH3TC1Q8TE82 1336 aa34.31■■■■□ 3.08
CHMP4B-201ENST00000217402 H7C1W4 665 aa34.3■■■■□ 3.08
CHMP4B-201ENST00000217402 ERFEQ4G0M1 354 aa34.3■■■■□ 3.08
CHMP4B-201ENST00000217402 ZBTB7BO15156 539 aaPredicted RBP34.29■■■■□ 3.08
CHMP4B-201ENST00000217402 PRR5LQ6MZQ0 368 aa34.29■■■■□ 3.08
CHMP4B-201ENST00000217402 UBTFL1P0CB47 393 aaPredicted RBP34.28■■■■□ 3.08
CHMP4B-201ENST00000217402 POLD1P28340 1107 aa34.28■■■■□ 3.08
CHMP4B-201ENST00000217402 UTYO14607 1347 aa34.28■■■■□ 3.08
CHMP4B-201ENST00000217402 ABCC12Q96J65 1359 aa34.28■■■■□ 3.08
CHMP4B-201ENST00000217402 CASP7P55210 303 aa34.27■■■■□ 3.08
CHMP4B-201ENST00000217402 GNAI3P08754 354 aa34.26■■■■□ 3.08
CHMP4B-201ENST00000217402 NEFLP07196 543 aa34.26■■■■□ 3.07
CHMP4B-201ENST00000217402 EXOC6Q8TAG9 804 aa34.26■■■■□ 3.07
CHMP4B-201ENST00000217402 NRXN2Q9P2S2 1712 aa34.25■■■■□ 3.07
CHMP4B-201ENST00000217402 IRS4O14654 1257 aaPredicted RBP34.25■■■■□ 3.07
CHMP4B-201ENST00000217402 HCLS1P14317 486 aaPredicted RBP34.24■■■■□ 3.07
CHMP4B-201ENST00000217402 ST5P78524 1137 aa34.24■■■■□ 3.07
CHMP4B-201ENST00000217402 CDHR2Q9BYE9 1310 aa34.24■■■■□ 3.07
CHMP4B-201ENST00000217402 SUCLG2Q96I99 432 aa34.23■■■■□ 3.07
CHMP4B-201ENST00000217402 C1orf115Q9H7X2 142 aa34.23■■■■□ 3.07
CHMP4B-201ENST00000217402 SGIP1Q9BQI5 828 aa34.22■■■■□ 3.07
CHMP4B-201ENST00000217402 SPON1Q9HCB6 807 aa34.22■■■■□ 3.07
CHMP4B-201ENST00000217402 PTGER2P43116 358 aa34.22■■■■□ 3.07
CHMP4B-201ENST00000217402 LRRFIP2Q9Y608 721 aaKnown RBP34.22■■■■□ 3.07
CHMP4B-201ENST00000217402 CHMP4BQ9H444 224 aaKnown RBP34.21■■■■□ 3.07
CHMP4B-201ENST00000217402 ZBTB40Q9NUA8 1239 aa34.21■■■■□ 3.07
CHMP4B-201ENST00000217402 GNAI2P04899 355 aa34.19■■■■□ 3.06
CHMP4B-201ENST00000217402 DDX60Q8IY21 1712 aaKnown RBP34.19■■■■□ 3.06
CHMP4B-201ENST00000217402 KAZALD1Q96I82 304 aa34.19■■■■□ 3.06
CHMP4B-201ENST00000217402 EPHA10Q5JZY3 1008 aa34.18■■■■□ 3.06
CHMP4B-201ENST00000217402 LAMB2P55268 1798 aa34.18■■■■□ 3.06
CHMP4B-201ENST00000217402 TNRC6CQ9HCJ0 1690 aaKnown RBP34.17■■■■□ 3.06
CHMP4B-201ENST00000217402 SLC10A5Q5PT55 438 aa34.17■■■■□ 3.06
CHMP4B-201ENST00000217402 BICC1Q9H694 974 aaKnown RBP34.17■■■■□ 3.06
CHMP4B-201ENST00000217402 PDE8AO60658 829 aa34.16■■■■□ 3.06
CHMP4B-201ENST00000217402 C3orf67Q6ZVT6 689 aa34.16■■■■□ 3.06
CHMP4B-201ENST00000217402 HSP90B1P14625 803 aaKnown RBP34.15■■■■□ 3.06
CHMP4B-201ENST00000217402 HDAC5Q9UQL6 1122 aa34.15■■■■□ 3.06
CHMP4B-201ENST00000217402 PLA2G12BQ9BX93 195 aa34.15■■■■□ 3.06
CHMP4B-201ENST00000217402 C10orf71Q711Q0 1435 aa34.14■■■■□ 3.06
CHMP4B-201ENST00000217402 CTSWP56202 376 aa34.14■■■■□ 3.06
CHMP4B-201ENST00000217402 FOXO4P98177 505 aa34.14■■■■□ 3.06
CHMP4B-201ENST00000217402 NLRP3Q96P20 1036 aa34.13■■■■□ 3.05
CHMP4B-201ENST00000217402 CCDC85AQ96PX6 553 aaPredicted RBP34.13■■■■□ 3.05
CHMP4B-201ENST00000217402 BRIP1Q9BX63 1249 aa34.13■■■■□ 3.05
CHMP4B-201ENST00000217402 RIC1Q4ADV7 1423 aa34.13■■■■□ 3.05
CHMP4B-201ENST00000217402 ANKRD31Q8N7Z5 1873 aa34.12■■■■□ 3.05
CHMP4B-201ENST00000217402 ANKRD44Q8N8A2 993 aa34.12■■■■□ 3.05
CHMP4B-201ENST00000217402 LMBR1LQ6UX01 489 aa34.11■■■■□ 3.05
CHMP4B-201ENST00000217402 CHMP3Q9Y3E7 222 aa34.11■■■■□ 3.05
CHMP4B-201ENST00000217402 KLHL34Q8N239 644 aa34.1■■■■□ 3.05
CHMP4B-201ENST00000217402 PPP1R1BQ9UD71 204 aaPredicted RBP34.1■■■■□ 3.05
CHMP4B-201ENST00000217402 TTLL11Q8NHH1 800 aa34.08■■■■□ 3.05
CHMP4B-201ENST00000217402 MYH3P11055 1940 aa34.08■■■■□ 3.05
CHMP4B-201ENST00000217402 PDE6BP35913 854 aa34.08■■■■□ 3.05
CHMP4B-201ENST00000217402 RABL6Q3YEC7 729 aaPredicted RBP34.08■■■■□ 3.05
CHMP4B-201ENST00000217402 FAM161AQ3B820 660 aa34.06■■■■□ 3.04
CHMP4B-201ENST00000217402 CEP85Q6P2H3 762 aa34.06■■■■□ 3.04
CHMP4B-201ENST00000217402 CSF1RP07333 972 aa34.05■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms