RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CDH13P55290 713 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 ZNF672Q499Z4 452 aaPredicted RBP13.1□□□□□ -0.31
PNKP-218ENST00000625299 GLYR1Q49A26 553 aaPredicted RBP13.1□□□□□ -0.31
PNKP-218ENST00000625299 TCHHL1Q5QJ38 904 aaPredicted RBP13.1□□□□□ -0.31
PNKP-218ENST00000625299 NCMAPQ5T1S8 102 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 FIGNL1Q6PIW4 674 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 GALNT10Q86SR1 603 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 WDR75Q8IWA0 830 aaKnown RBP13.1□□□□□ -0.31
PNKP-218ENST00000625299 SAMD14Q8IZD0 417 aaPredicted RBP13.1□□□□□ -0.31
PNKP-218ENST00000625299 SLC9A6Q92581 669 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 BBS4Q96RK4 519 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 RHNO1Q9BSD3 238 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 AMBRA1Q9C0C7 1298 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 Q9N2J8 555 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 NGBQ9NPG2 151 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 SLC35C2Q9NQQ7 365 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 GRHL1Q9NZI5 618 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 VPS29Q9UBQ0 182 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 MCM8Q9UJA3 840 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 SAR1BQ9Y6B6 198 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.1□□□□□ -0.314e-9■■■□□ 19
PNKP-218ENST00000625299 IGHV4-30-2A0A087WSY4 118 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 NDUFB5O43674 189 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 UTS2O95399 124 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 ANGPTL1O95841 491 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 PTNP21246 168 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 MPIP34949 423 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 PLTPP55058 493 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 SRSF2Q01130 221 aaKnown RBP13.09□□□□□ -0.31
PNKP-218ENST00000625299 BSPH1Q075Z2 132 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 C17orf67Q0P5P2 114 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 TAB1Q15750 504 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 PGGHGQ32M88 737 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 CYP27C1Q4G0S4 372 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 MFSD12Q6NUT3 480 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 TMEM107Q6UX40 140 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 OR2V1Q8NHB1 315 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 CDC26Q8NHZ8 85 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 KCNK17Q96T54 332 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 BEX2Q9BXY8 128 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 EBPLQ9BY08 206 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 BARX1Q9HBU1 254 aaPredicted RBP13.09□□□□□ -0.31
PNKP-218ENST00000625299 GLRX2Q9NS18 164 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 FBXO34Q9NWN3 711 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 PAQR5Q9NXK6 330 aaPredicted RBP13.09□□□□□ -0.31
PNKP-218ENST00000625299 DMGDHQ9UI17 866 aaKnown RBP13.09□□□□□ -0.31
PNKP-218ENST00000625299 MRTO4Q9UKD2 239 aaKnown RBP13.09□□□□□ -0.31
PNKP-218ENST00000625299 TMCO1Q9UM00 188 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 SNX8Q9Y5X2 465 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 CADP27708 2225 aa13.09□□□□□ -0.31
PNKP-218ENST00000625299 ALPK2Q86TB3 2170 aa13.08□□□□□ -0.31
PNKP-218ENST00000625299 FAM234BA2RU67 622 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 FAM187AA6NFU0 413 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 RAD51CO43502 376 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 OR4F21O95013 312 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 IL33O95760 270 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 JUNP05412 331 aaKnown RBP13.08□□□□□ -0.32
PNKP-218ENST00000625299 RPS17P08708 135 aaKnown RBP13.08□□□□□ -0.32
PNKP-218ENST00000625299 RBP1P09455 135 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 CHN1P15882 459 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 ZNF17P17021 662 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 NCBP2P52298 156 aaKnown RBP eCLIP13.08□□□□□ -0.32
PNKP-218ENST00000625299 NUDT6P53370 316 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 HEPACAMQ14CZ8 416 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 ZNHIT3Q15649 155 aaPredicted RBP13.08□□□□□ -0.32
PNKP-218ENST00000625299 TMEM44Q2T9K0 475 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 TMEM201Q5SNT2 666 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 HBMQ6B0K9 141 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 DNM1P46Q6ZS02 220 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 CDYL2Q8N8U2 506 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 C16orf78Q8WTQ4 265 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 ROBO4Q8WZ75 1007 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 ADGRG7Q96K78 797 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 NPAS1Q99742 590 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 TRAF4Q9BUZ4 470 aaPredicted RBP13.08□□□□□ -0.32
PNKP-218ENST00000625299 C19orf24Q9BVV8 132 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 LRTM1Q9HBL6 345 aa13.08□□□□□ -0.32
PNKP-218ENST00000625299 DDX18Q9NVP1 670 aaKnown RBP13.08□□□□□ -0.32
PNKP-218ENST00000625299 FREM1Q5H8C1 2179 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 MANBAO00462 879 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 GCM2O75603 506 aaPredicted RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 FESP07332 822 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 ME2P23368 584 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 PSMD4P55036 377 aaKnown RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 GNG11P61952 73 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 RAE1P78406 368 aaKnown RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 BTKQ06187 659 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 CSTF3Q12996 717 aaKnown RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 TMEM249Q2WGJ8 235 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 GRAMD1BQ3KR37 738 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 SFRP5Q5T4F7 317 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 APOOLQ6UXV4 268 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 BANPQ8N9N5 519 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 GATSQ8NAP1 163 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 FBXO25Q8TCJ0 367 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 ZNF483Q8TF39 744 aaPredicted RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 ABHD3Q8WU67 409 aa13.07□□□□□ -0.32
PNKP-218ENST00000625299 KISS1RQ969F8 398 aaPredicted RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 C11orf24Q96F05 449 aaPredicted RBP13.07□□□□□ -0.32
PNKP-218ENST00000625299 REXO5Q96IC2 774 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms