RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CCKBRP32239 447 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 C21orf58P58505 322 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 FAM53BQ14153 422 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 PTGES3Q15185 160 aaKnown RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 BTBD16Q32M84 506 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 RBM48Q5RL73 367 aaKnown RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 PERM1Q5SV97 790 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 TMEM71Q6P5X7 295 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 RABEPKQ7Z6M1 372 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 SLC7A13Q8TCU3 470 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 NPLQ9BXD5 320 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 LHPPQ9H008 270 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 SLC39A1Q9NY26 324 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 GPR83Q9NYM4 423 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 PILRAQ9UKJ1 303 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 ARHGAP33O14559 1287 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 HLA-DQA2P01906 255 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 EEF1A2Q05639 463 aaKnown RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 SLC30A6Q6NXT4 461 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 STT3BQ8TCJ2 826 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 CEP19Q96LK0 163 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 PELOQ9BRX2 385 aaKnown RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 MKKSQ9NPJ1 570 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 FAM47E-STBD1D6RA91 191 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 TUBA4AP68366 448 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 FZD5Q13467 585 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 FAM199XQ6PEV8 388 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-213ENST00000620219 BMP8AQ7Z5Y6 402 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 TMEM156Q8N614 296 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 C16orf52Q8NHV5 167 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 CMKLR1Q99788 373 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 SERHL2Q9H4I8 314 aa14.62□□□□□ -0.07
CPSF1-213ENST00000620219 TMX2-CTNND1H3BSU7 103 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 C21orf33P30042 268 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-213ENST00000620219 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF691Q5VV52 312 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 IRAK1BP1Q5VVH5 260 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 C16orf87Q6PH81 154 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 KLHL17Q6TDP4 642 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 CNOT9Q92600 299 aaKnown RBP14.61□□□□□ -0.07
CPSF1-213ENST00000620219 FAM131CQ96AQ9 280 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 SLC38A1Q9H2H9 487 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 ACER3Q9NUN7 267 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 CRYBA2P53672 197 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 E2F2Q14209 437 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 FCRLBQ6BAA4 426 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 DNAJC22Q8N4W6 341 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 PRO3102Q9H379 93 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 CCNB1IP1Q9NPC3 277 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 NECTIN3Q9NQS3 549 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 CARD8Q9Y2G2 431 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 A0A1B0GTQ1 180 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 C2orf72A6NCS6 295 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 HSD17B7P56937 341 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 APOFQ13790 326 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 BCDIN3DQ7Z5W3 292 aaKnown RBP14.61□□□□□ -0.07
CPSF1-213ENST00000620219 B3GNT8Q7Z7M8 397 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 OR4C6Q8NH72 309 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 PRRC1Q96M27 445 aa14.61□□□□□ -0.07
CPSF1-213ENST00000620219 RGS5O15539 181 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 DNAJB5O75953 348 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 NTN1O95631 604 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 AK1P00568 194 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 STSP08842 583 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 CXCR1P25024 350 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 SLC5A2P31639 672 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 GPR3P46089 330 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 SH3BGRP55822 239 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-213ENST00000620219 PUM1Q14671 1186 aaKnown RBP eCLIP14.6□□□□□ -0.073e-6■■■□□ 17.4
CPSF1-213ENST00000620219 ANGPT1Q15389 498 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 KDM4DQ6B0I6 523 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 MED25Q71SY5 747 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 OAFQ86UD1 273 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 LAPTM4BQ86VI4 370 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 GPR32P1Q8NGA4 272 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 TTTY10Q9BZA0 68 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 STRADBQ9C0K7 418 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 METTL7AQ9H8H3 244 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 LCKP06239 509 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 TSPAN19P0C672 248 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 GRK6P43250 576 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 SMSP52788 366 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 ISL1P61371 349 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 DCDP81605 110 aaKnown RBP14.6□□□□□ -0.07
CPSF1-213ENST00000620219 SPARTQ8N0X7 666 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 WFDC6Q9BQY6 131 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 N6AMT1Q9Y5N5 214 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 CEPT1Q9Y6K0 416 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 IDSB3KWA1 339 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 AHCYL1O43865 530 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 GCGRP47871 477 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 LSM11P83369 360 aaKnown RBP eCLIP14.6□□□□□ -0.075e-7■■□□□ 14.1
CPSF1-213ENST00000620219 NCF4Q15080 339 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 LANCL3Q6ZV70 420 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 NKAIN4Q8IVV8 208 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 C5orf34Q96MH7 638 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 EGLN3Q9H6Z9 239 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 PTTG2Q9NZH5 202 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 TRAPPC13A5PLN9 417 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 FOXS1O43638 330 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms