RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HIST2H2BCQ6DN03 193 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 B3GNT6Q6ZMB0 384 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 GLB1L3Q8NCI6 653 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-213ENST00000598355 OR4C3Q8NH37 302 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 OR5AK3PQ8NH89 298 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 CKAP2Q8WWK9 683 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 CDS1Q92903 461 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 OTUB1Q96FW1 271 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-213ENST00000598355 TTYH2Q9BSA4 534 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 YIPF4Q9BSR8 244 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 G6PC3Q9BUM1 346 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 INTS9Q9NV88 658 aaKnown RBP14.66□□□□□ -0.06
TRIM28-213ENST00000598355 FBXO34Q9NWN3 711 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 ZIM2Q9NZV7 527 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 PPP4R1LQ9P1A2 415 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 SLC6A5Q9Y345 797 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 CACNA1DQ01668 2161 aa14.66□□□□□ -0.06
TRIM28-213ENST00000598355 C15orf38-AP3S2A0A0A6YYH1 394 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 RNF103-CHMP3A0A140T963 221 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 NPIPB9F8W1W9 429 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 CFLARO15519 480 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ZIC3O60481 467 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 PGRP06401 933 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 SOAT1P35610 550 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 DSCR4P56555 118 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 NUP107P57740 925 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 B3GALT5-AS1P59052 145 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ZNF630Q2M218 657 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ACSF3Q4G176 576 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 CCNJQ5T5M9 372 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 C1orf185Q5T7R7 199 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 AP1ARQ63HQ0 302 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 SAXO2Q658L1 398 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 FIGNL1Q6PIW4 674 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 SEM1Q6ZVN7 128 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ACAD11Q709F0 780 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 YRDCQ86U90 279 aaKnown RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ANKRD46Q86W74 232 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 PM20D2Q8IYS1 436 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ACBD4Q8NC06 268 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 CHDHQ8NE62 594 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 OR4A15Q8NGL6 344 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 JADE3Q92613 823 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 WDYHV1Q96HA8 205 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 OR7D2Q96RA2 312 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 SDHAF3Q9NRP4 125 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 FAF1Q9UNN5 650 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-213ENST00000598355 KCNE3Q9Y6H6 103 aa14.65□□□□□ -0.06
TRIM28-213ENST00000598355 ITPR2Q14571 2701 aa14.65□□□□□ -0.07
TRIM28-213ENST00000598355 AHRRA9YTQ3 701 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 CLDN14O95500 239 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 ANGPTL1O95841 491 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 GLI4P10075 376 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 CPN1P15169 458 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 UQCRC2P22695 453 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 CHMP24386 653 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 S100A3P33764 101 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 RFX3P48380 749 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 C17orf67Q0P5P2 114 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 LRRC74AQ0VAA2 488 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 TMEM44Q2T9K0 475 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 SPDYE7PQ495Y7 208 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 DCST2Q5T1A1 773 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 OR5M10Q6IEU7 315 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF585AQ6P3V2 769 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 C6orf120Q7Z4R8 191 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 ADGRE4PQ86SQ3 457 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 GALNT10Q86SR1 603 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 MARCH3Q86UD3 253 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 IFNEQ86WN2 208 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 VPS37AQ8NEZ2 397 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 ADAMTS15Q8TE58 950 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 RND1Q92730 232 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 ABTB1Q969K4 478 aaPredicted RBP14.64□□□□□ -0.07
TRIM28-213ENST00000598355 NEURL3Q96EH8 262 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 SLC35G5Q96KT7 338 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 MAGEB18Q96M61 343 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 TBL1XR1Q9BZK7 514 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 HHATLQ9HCP6 504 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 UBQLN4Q9NRR5 601 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 TAS2R10Q9NYW0 307 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 RNF6Q9Y252 685 aa14.64□□□□□ -0.07
TRIM28-213ENST00000598355 C9JVG2 144 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DIAPH2O60879 1101 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 AK1P00568 194 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 GUSBP08236 651 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DPP4P27487 766 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 COL8A1P27658 744 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 GRNP28799 593 aaKnown RBP14.63□□□□□ -0.07
TRIM28-213ENST00000598355 CHRNB4P30926 498 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DCTP40126 519 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 CLK3P49761 638 aaKnown RBP14.63□□□□□ -0.07
TRIM28-213ENST00000598355 LHX2P50458 406 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DGKQP52824 942 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 NME5P56597 212 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 RPS26P62854 115 aaKnown RBP14.63□□□□□ -0.07
TRIM28-213ENST00000598355 TOMM20Q15388 145 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 RIPPLY2Q5TAB7 128 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 NXNQ6DKJ4 435 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 HEPHL1Q6MZM0 1159 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms