RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 HSP90B2PQ58FF3 399 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 DCST2Q5T1A1 773 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 C1orf185Q5T7R7 199 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 XKRXQ6PP77 449 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 DNAJC14Q6Y2X3 702 aaPredicted RBP17.74■□□□□ 0.43
SS18-209ENST00000578595 B3GNT6Q6ZMB0 384 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 C6orf120Q7Z4R8 191 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 ZNF614Q8N883 585 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 RND1Q92730 232 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 ABTB1Q969K4 478 aaPredicted RBP17.74■□□□□ 0.43
SS18-209ENST00000578595 THOC1Q96FV9 657 aaKnown RBP17.74■□□□□ 0.43
SS18-209ENST00000578595 MAELQ96JY0 434 aaKnown RBP17.74■□□□□ 0.43
SS18-209ENST00000578595 MAGEB18Q96M61 343 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 SFXN2Q96NB2 322 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 PANX1Q96RD7 426 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 PTGES2Q9H7Z7 377 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 TCF7L2Q9NQB0 619 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 GPATCH2Q9NW75 528 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 FBXO34Q9NWN3 711 aa17.74■□□□□ 0.43
SS18-209ENST00000578595 INTS1Q8N201 2190 aaKnown RBP17.74■□□□□ 0.43
SS18-209ENST00000578595 SCDO00767 359 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 ADAM10O14672 748 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 NDUFB5O43674 189 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 FADS1O60427 444 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 SLC22A3O75751 556 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 OXSR1O95747 527 aaPredicted RBP17.73■□□□□ 0.43
SS18-209ENST00000578595 GABRA1P14867 456 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 UQCRC2P22695 453 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 IL12AP29459 219 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 SRD5A2P31213 254 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 NUP107P57740 925 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 CRYZQ08257 329 aaKnown RBP17.73■□□□□ 0.43
SS18-209ENST00000578595 GSTA3Q16772 222 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 PDCD4Q53EL6 469 aaKnown RBP17.73■□□□□ 0.43
SS18-209ENST00000578595 RAET1LQ5VY80 246 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 EPGNQ6UW88 154 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 C16orf62Q7Z3J2 963 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 ZAR1Q86SH2 424 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 DUSP19Q8WTR2 217 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 CA5BP1Q8WTZ4 195 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 CKAP2Q8WWK9 683 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 HOXB13Q92826 284 aaPredicted RBP17.73■□□□□ 0.43
SS18-209ENST00000578595 SLC35A5Q9BS91 424 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 UGT2B28Q9BY64 529 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 CENPEQ02224 2701 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 KIAA1549Q9HCM3 1950 aa17.73■□□□□ 0.43
SS18-209ENST00000578595 NPIPA5A0A0B4J1W7 369 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 NPIPA7E9PJI5 369 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 ZNF195O14628 629 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 PGRP06401 933 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 NPIPA8P0DM63 369 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 BMP7P18075 431 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 HK1P19367 917 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 RNF144AP50876 292 aaPredicted RBP17.72■□□□□ 0.43
SS18-209ENST00000578595 GAS1P54826 345 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 AQP5P55064 265 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 DSCR4P56555 118 aaPredicted RBP17.72■□□□□ 0.43
SS18-209ENST00000578595 PHC1P78364 1004 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 SRYQ05066 204 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.72■□□□□ 0.43
SS18-209ENST00000578595 FLYWCH1Q4VC44 716 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 TNFAIP8L2Q6P589 184 aaPredicted RBP17.72■□□□□ 0.43
SS18-209ENST00000578595 ENPP6Q6UWR7 440 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 PM20D2Q8IYS1 436 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 ULK2Q8IYT8 1036 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 MIER2Q8N344 545 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 MARVELD2Q8N4S9 558 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 TRIML2Q8N7C3 387 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 GLB1L3Q8NCI6 653 aaPredicted RBP17.72■□□□□ 0.43
SS18-209ENST00000578595 OR2M3Q8NG83 312 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 OR2B2Q9GZK3 357 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 OR51I1Q9H343 314 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 UBQLN4Q9NRR5 601 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 KCNE3Q9Y6H6 103 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 PKDREJQ9NTG1 2253 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 CACNA1DQ01668 2161 aa17.72■□□□□ 0.43
SS18-209ENST00000578595 HEATR5AQ86XA9 2040 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 FAM90A27PA6NNH2 459 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 H0Y3Z8 333 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 CLDN14O95500 239 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 ANP32DO95626 131 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 KHKP50053 298 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 C17orf67Q0P5P2 114 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 TIGD2Q4W5G0 525 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 DCST1Q5T197 706 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 ATAD3BQ5T9A4 648 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 AAGABQ6PD74 315 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 ZNF621Q6ZSS3 439 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 CCDC71Q8IV32 467 aaPredicted RBP17.71■□□□□ 0.43
SS18-209ENST00000578595 ZNF527Q8NB42 609 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 OR4C3Q8NH37 302 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 RNF138Q8WVD3 245 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 NTNG2Q96CW9 530 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 SH3YL1Q96HL8 342 aaPredicted RBP17.71■□□□□ 0.43
SS18-209ENST00000578595 TIMP4Q99727 224 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 EBF4Q9BQW3 602 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 RTN4RQ9BZR6 473 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 EXD2Q9NVH0 621 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 ZNF446Q9NWS9 450 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 ZIM2Q9NZV7 527 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms