RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ADH1AP07327 375 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SLC6A1P30531 599 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 RAB5CP51148 216 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 PKIAP61925 76 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 MAD2L1Q13257 205 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 ODF4Q2M2E3 257 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 DEFB115Q30KQ5 88 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 C22orf42Q6IC83 251 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SLC25A24Q6NUK1 477 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 NPSR1Q6W5P4 371 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 ZNF461Q8TAF7 563 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SPPL3Q8TCT6 385 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SKA2Q8WVK7 121 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 KLHL5Q96PQ7 755 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 GPR62Q9BZJ7 368 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SEMA6CQ9H3T2 930 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 NT5MQ9NPB1 228 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 MARCH5Q9NX47 278 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 VNN3Q9NY84 501 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 PCDHB7Q9Y5E2 793 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 FXYD6-FXYD2A0A087WZ82 144 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 TMEM218A2RU14 115 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 C7orf66A4D0T2 115 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 ANXA2P07355 339 aaKnown RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 CTSOP43234 321 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 LPCAT3Q6P1A2 487 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 ZC3H14Q6PJT7 736 aaKnown RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 ABHD13Q7L211 337 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 TRAM1L1Q8N609 369 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 OR56A3Q8NH54 315 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 C22orf15Q8WYQ4 148 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 FXYD6Q9H0Q3 95 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 PDFQ9HBH1 243 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 TMEM248Q9NWD8 314 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 RNF24Q9Y225 148 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 AAR2Q9Y312 384 aaKnown RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 CHD9Q3L8U1 2897 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 TMEM210A6NLX4 147 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 UBFD1O14562 309 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 ANXA9O76027 345 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 FGF19O95750 216 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 IFNA10P01566 189 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 IFNGR1P15260 489 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 DRD5P21918 477 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 XPAP23025 273 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 RAB8AP61006 207 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 PRR5P85299 388 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 PTRHD1Q6GMV3 140 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 ZNF367Q7RTV3 350 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 PCSK9Q8NBP7 692 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 OR2T12Q8NG77 320 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 KIAA1143Q96AT1 154 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 CDCA3Q99618 268 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 NAA11Q9BSU3 229 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 DPAGT1Q9H3H5 408 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 MARCH4Q9P2E8 410 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 KCTD3Q9Y597 815 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 LDB2O43679 373 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 HIST1H1BP16401 226 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 C5AR1P21730 350 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 UQCRC2P22695 453 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 AKR1C3P42330 323 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 WNT3AP56704 352 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 LHX8Q68G74 356 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 KIAA0930Q6ICG6 404 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 FBXL22Q6P050 247 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 GDPD4Q6W3E5 623 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 GPR65Q8IYL9 337 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 PTGR2Q8N8N7 351 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 ST7LQ8TDW4 575 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 CCDC107Q8WV48 283 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 PSMG2Q969U7 264 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 SPON2Q9BUD6 331 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 FZD3Q9NPG1 666 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 NUP214P35658 2090 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 LOC285095A0A1B0GVY8 99 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 DRGXA6NNA5 263 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 AP4M1O00189 453 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 EREGO14944 169 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 DPM1O60762 260 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 FARS2O95363 451 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 RHOP08100 348 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 ZNF888P0CJ79 500 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 GABRA1P14867 456 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 SDHAP31040 664 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 MAT2AP31153 395 aaKnown RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 CDKN2DP55273 166 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 RNF151Q2KHN1 245 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 OR10A6Q8NH74 314 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 SLC25A46Q96AG3 418 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 ULK4Q96C45 1275 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 TEX37Q96LM6 180 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 TMEM208Q9BTX3 173 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 ACPTQ9BZG2 426 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 RNF32Q9H0A6 362 aa10.18□□□□□ -0.78
CLK3-226ENST00000569406 TEX10Q9NXF1 929 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 LEF1Q9UJU2 399 aaPredicted RBP10.18□□□□□ -0.78
CLK3-226ENST00000569406 DNAH14Q0VDD8 3507 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 A0A1B0GVC2 190 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PLSCR5A0PG75 271 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms