RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NPHS2Q9NP85 383 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SERHLQ9NQF3 203 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 UBQLN4Q9NRR5 601 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 TMEM45AQ9NWC5 275 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 ACAD8Q9UKU7 415 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 HCFC1P51610 2035 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 INTS1Q8N201 2190 aaKnown RBP11.85□□□□□ -0.51
CLK3-224ENST00000568605 MED12Q93074 2177 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 MED12LQ86YW9 2145 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 A0A0G2JND7 137 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 CCDC154A6NI56 674 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 C9JVG2 144 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 H3BNH8 94 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 NDUFB5O43674 189 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 KRT75O95678 551 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 OXSR1O95747 527 aaPredicted RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 GABRA1P14867 456 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 ENDOUP21128 410 aaKnown RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 TBXA2RP21731 343 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 IL12AP29459 219 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 PTGER4P35408 488 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 MAGEA8P43361 318 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 SMSP52788 366 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 PHC1P78364 1004 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 C17orf67Q0P5P2 114 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 RCAN2Q14206 197 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 FLYWCH1Q4VC44 716 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 C6orf10Q5SRN2 563 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 SAXO2Q658L1 398 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 TMEM211Q6ICI0 200 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 DNAJC14Q6Y2X3 702 aaPredicted RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 CHERPQ8IWX8 916 aaKnown RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 PM20D2Q8IYS1 436 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 WDSUB1Q8N9V3 476 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 FAM83FQ8NEG4 500 aaPredicted RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 OR5D16Q8NGK9 328 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 FAM110BQ8TC76 370 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 MIPOL1Q8TD10 442 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 NEURL3Q96EH8 262 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 CCDC120Q96HB5 630 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 OR2B2Q9GZK3 357 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 OR51I1Q9H343 314 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 DCTN4Q9UJW0 460 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 MEMO1Q9Y316 297 aa11.84□□□□□ -0.51
CLK3-224ENST00000568605 USP9YO00507 2555 aaPredicted RBP11.84□□□□□ -0.51
CLK3-224ENST00000568605 A0A1W2PQD3 144 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 C2orf72A6NCS6 295 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ALG1L2C9J202 215 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 FAM47E-STBD1D6RA91 191 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 STX11O75558 287 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 WISP2O76076 250 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ZIC2O95409 532 aaPredicted RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 ANGPTL1O95841 491 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ACTL6AO96019 429 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 IGKV1D-16P01601 117 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 VIMP08670 466 aaKnown RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 HOXD4P09016 255 aaPredicted RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 ACVR2AP27037 513 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 DPP4P27487 766 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 DCTP40126 519 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 TRPC1P48995 793 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 GAS1P54826 345 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 DSCR4P56555 118 aaPredicted RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 RPS26P62854 115 aaKnown RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 NHSL2Q5HYW2 709 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 CCNJQ5T5M9 372 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 AAGABQ6PD74 315 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ENPP6Q6UWR7 440 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ZNF621Q6ZSS3 439 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 FGD2Q7Z6J4 655 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 MTERF4Q7Z6M4 381 aaKnown RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 GALNT10Q86SR1 603 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 DOLPP1Q86YN1 238 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 ZNF808Q8N4W9 903 aaPredicted RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 OR9I1Q8NGQ6 314 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 OIT3Q8WWZ8 545 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 CCDC134Q9H6E4 229 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 TAS2R10Q9NYW0 307 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 COQ3Q9NZJ6 369 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 FLRT3Q9NZU0 649 aa11.83□□□□□ -0.52
CLK3-224ENST00000568605 MRPS18CQ9Y3D5 142 aaKnown RBP11.83□□□□□ -0.52
CLK3-224ENST00000568605 MPDZO75970 2070 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 WIPF3A6NGB9 483 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 NR5A2O00482 541 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 ZG16O60844 167 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 NCF2P19878 526 aaPredicted RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 MSX1P28360 303 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 GUCY1A3Q02108 690 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 CRYZQ08257 329 aaKnown RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 ZNF630Q2M218 657 aaPredicted RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 ARHGAP11BQ3KRB8 267 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 WIPI1Q5MNZ9 446 aaPredicted RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 ZNF585AQ6P3V2 769 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 TNFAIP8L2Q6P589 184 aaPredicted RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 YRDCQ86U90 279 aaKnown RBP11.82□□□□□ -0.52
CLK3-224ENST00000568605 MARCH3Q86UD3 253 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 CLEC4FQ8N1N0 589 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 ZNF614Q8N883 585 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 FADS6Q8N9I5 356 aa11.82□□□□□ -0.52
CLK3-224ENST00000568605 CHDHQ8NE62 594 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms