RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NXF2Q9GZY0 626 aaKnown RBP18.85■□□□□ 0.61
CLN3-230ENST00000568076 DIMT1Q9UNQ2 313 aaKnown RBP18.85■□□□□ 0.61
CLN3-230ENST00000568076 GON4LQ3T8J9 2241 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 A0A0A6YYC8 382 aaPredicted RBP18.84■□□□□ 0.61
CLN3-230ENST00000568076 TGFBR3LH3BV60 316 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 I3L1I5 382 aaPredicted RBP18.84■□□□□ 0.61
CLN3-230ENST00000568076 CDC42EP2O14613 210 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 ZNF217O75362 1048 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 DBIP07108 87 aaKnown RBP18.84■□□□□ 0.61
CLN3-230ENST00000568076 IFI6P09912 130 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 SLC35E2P0CK97 266 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 GABRA3P34903 492 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 STAT5AP42229 794 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 FZD5Q13467 585 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 RGS21Q2M5E4 152 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 CYP4Z2PQ8N1L4 340 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 PROKR2Q8NFJ6 384 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 OR52R1Q8NGF1 315 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 MAP3K3Q99759 626 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 MMP27Q9H306 513 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 A0A1W2PR77 199 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 CDHR4A6H8M9 788 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 FOXS1O43638 330 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 S1PR1P21453 382 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 MAOBP27338 520 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 ETV5P41161 510 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 ETV1P50549 477 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 PSMD7P51665 324 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 SLC30A6Q6NXT4 461 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 SLC36A4Q6YBV0 504 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 WDR88Q6ZMY6 472 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 VWA5B2Q8N398 1253 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 HOXB13Q92826 284 aaPredicted RBP18.84■□□□□ 0.61
CLN3-230ENST00000568076 COX4I2Q96KJ9 171 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 IL20Q9NYY1 176 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 CCDC59Q9P031 241 aaKnown RBP18.84■□□□□ 0.61
CLN3-230ENST00000568076 HCN3Q9P1Z3 774 aa18.84■□□□□ 0.61
CLN3-230ENST00000568076 CCDC85CA6NKD9 419 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 PRODHO43272 600 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 BRINP1O60477 761 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 APOL3O95236 402 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 LYPD3O95274 346 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 RAB36O95755 333 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 FASLGP48023 281 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 POU6F2P78424 691 aaPredicted RBP18.83■□□□□ 0.61
CLN3-230ENST00000568076 ZNF620Q6ZNG0 422 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 RANBP3LQ86VV4 465 aaPredicted RBP18.83■□□□□ 0.61
CLN3-230ENST00000568076 AMER2Q8N7J2 671 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 FAM174AQ8TBP5 190 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 TBCCD1Q9NVR7 557 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 MRPS18AQ9NVS2 196 aaKnown RBP18.83■□□□□ 0.61
CLN3-230ENST00000568076 RHBDL2Q9NX52 303 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 CARD8Q9Y2G2 431 aa18.83■□□□□ 0.61
CLN3-230ENST00000568076 USP34Q70CQ2 3546 aa18.83■□□□□ 0.6
CLN3-230ENST00000568076 WWP2O00308 870 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 NKX2-2O95096 273 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 CH25HO95992 272 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 OCM2P0CE71 109 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 OCMP0CE72 109 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 NME1P15531 152 aaKnown RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 ENDOUP21128 410 aaKnown RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 CAPZBP47756 277 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 ZNF155Q12901 538 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 TIMM50Q3ZCQ8 353 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 ZC3H14Q6PJT7 736 aaKnown RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 ANKK1Q8NFD2 765 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 TOR1AIP2Q8NFQ8 470 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 LMX1AQ8TE12 382 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 ARSGQ96EG1 525 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 SLC38A2Q96QD8 506 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 POLR2J2Q9GZM3 115 aaKnown RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 UBE2ZQ9H832 354 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 CAPN10Q9HC96 672 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 IL20RAQ9UHF4 553 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 A3GALT2U3KPV4 340 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 TMEM131Q92545 1883 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 TRAPPC13A5PLN9 417 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 METTL12A8MUP2 240 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 KDM4EB2RXH2 506 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 OR10H2O60403 315 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 CD27P26842 260 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 CD38P28907 300 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 RAB15P59190 212 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 ELOCQ15369 112 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 OR1Q1Q15612 314 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 FLYWCH1Q4VC44 716 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 OSTF1Q92882 214 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 RNFT2Q96EX2 444 aa18.82■□□□□ 0.6
CLN3-230ENST00000568076 C6orf62Q9GZU0 229 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 ZNF223Q9UK11 482 aaPredicted RBP18.82■□□□□ 0.6
CLN3-230ENST00000568076 HRKO00198 91 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 MYL12BO14950 172 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 SURF4O15260 269 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 KCNK2O95069 426 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 AK1P00568 194 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 CRYBB2P43320 205 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 MAT1AQ00266 395 aaKnown RBP18.81■□□□□ 0.6
CLN3-230ENST00000568076 PSG6Q00889 435 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 PERM1Q5SV97 790 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 TRMT61AQ96FX7 289 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms