RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CSNK1G3Q9Y6M4 447 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 KIR2DS5A0A0G2JLQ3 304 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 A0A0G2JNG1 304 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 AGAP5A6NIR3 686 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 KIR2DS3K7RE56 304 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 SYT5O00445 386 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 HNRNPCP07910 306 aaKnown RBP eCLIP9.88□□□□□ -0.837e-8■■□□□ 11.8
CUX1-217ENST00000558836 ALOX5P09917 674 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 HTR2AP28223 471 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 SSTR4P31391 388 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 CSTF2P33240 577 aaKnown RBP eCLIP9.88□□□□□ -0.832e-6■■■□□ 18.4
CUX1-217ENST00000558836 MAGEA8P43361 318 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 SMSP52788 366 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 MADCAM1Q13477 382 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 KIR2DS5Q14953 304 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 LARS2Q15031 903 aaKnown RBP9.88□□□□□ -0.83
CUX1-217ENST00000558836 SLC35F1Q5T1Q4 408 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 USP43Q70EL4 1123 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 LHFPL3Q86UP9 236 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 LMX1AQ8TE12 382 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 GRHL3Q8TE85 626 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 COX4I2Q96KJ9 171 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 BCL7BQ9BQE9 202 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 DPH1Q9BZG8 443 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 NDOR1Q9UHB4 597 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 DTX4Q9Y2E6 619 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 PCDHGA3Q9Y5H0 932 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 ENTPD2Q9Y5L3 495 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 SPACA6W5XKT8 324 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 RP1P56715 2156 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 COL4A2P08572 1712 aa9.88□□□□□ -0.83
CUX1-217ENST00000558836 THADAQ6YHU6 1953 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 TGFBR3LH3BV60 316 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 GNB5O14775 395 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ZNF136P52737 540 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 GFERP55789 205 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 TEKQ02763 1124 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 CSTF1Q05048 431 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 MGAT2Q10469 447 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 DUSP8Q13202 625 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 FLYWCH1Q4VC44 716 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 FCRLBQ6BAA4 426 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 RNF44Q7L0R7 432 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 MCATQ8IVS2 390 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 OR4F15Q8NGB8 312 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PIGXQ8TBF5 258 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 GNPDA2Q8TDQ7 276 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 RNFT2Q96EX2 444 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 DACH2Q96NX9 599 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 POLDIP3Q9BY77 421 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 PIGUQ9H490 435 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 FAIMQ9NVQ4 179 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PTGFRNQ9P2B2 879 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ZC3H12DA2A288 527 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 METTL15A6NJ78 407 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 BOLA2-SMG1P6H3BVE0 249 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 CTDSP2O14595 271 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 MYL12BO14950 172 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 STX11O75558 287 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 UBXN7O94888 489 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ATP1B1P05026 303 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 MYF5P13349 255 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 GTF2E2P29084 291 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 EEF1A1P68104 462 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 ZNF155Q12901 538 aaPredicted RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 TSPAN31Q12999 210 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 TRIM16LQ309B1 348 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 DEFB133Q30KQ1 61 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PRAMEF8Q5VWM4 474 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PRAMEF7Q5VXH5 474 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ARL14Q8N4G2 192 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 FAM26EQ8N5C1 309 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ZNF655Q8N720 491 aaPredicted RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 ACOT11Q8WXI4 607 aaPredicted RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 CLIP3Q96DZ5 547 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 SAMD8Q96LT4 415 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PTCHD1Q96NR3 888 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ANKHQ9HCJ1 492 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 LYRM4Q9HD34 91 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 FBXO8Q9NRD0 319 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 LSM2Q9Y333 95 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 MAU2Q9Y6X3 613 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 IGHV1OR15-9A0A0B4J2B8 117 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 TBX1O43435 398 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 MBTPS2O43462 519 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ADAM11O75078 769 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 ZNF12P17014 697 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 MAOAP21397 527 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 IFNA8P32881 189 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 PGDP52209 483 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 KCNAB1Q14722 419 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 NCF4Q15080 339 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 TMEM201Q5SNT2 666 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 CD300LDQ6UXZ3 194 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 CHRDL2Q6WN34 429 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 AMER2Q8N7J2 671 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 NANOGP1Q8N7R0 232 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 C19orf47Q8N9M1 422 aaKnown RBP9.87□□□□□ -0.83
CUX1-217ENST00000558836 ANKK1Q8NFD2 765 aa9.87□□□□□ -0.83
CUX1-217ENST00000558836 C9orf43Q8TAL5 461 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms